Bioconductor DESeqDataSetFromMatrix

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DESeqDataSetFromMatrix

2.9 years ago Gian ▴ 30

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DESeqDataSet DESeqDataSetFromMatrix rnaseq deseq2

7.8 years ago ErickF ▴ 40

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deseq2 rnaseq featurecounts DESeqDataSetFromMatrix

updated 6.4 years ago by Michael Love 41k • written 6.5 years ago by bioinf ▴ 10

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help DESeq2 DESeqDataSetFromMatrix rownames

updated 23 months ago by Sanatan • 0 • written 3.0 years ago by dorina.jamniczky • 0

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DESeq2 deseqdatasetfrommatrix r new version

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by megannj • 0

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deseq2 replicates error DESeqDataSetFromMatrix

updated 5.1 years ago by Michael Love 41k • written 5.1 years ago by Yonatan Amzaleg • 0

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deseq2 DESeqDataSetFromMatrix duplicate

updated 6.1 years ago by James W. MacDonald 65k • written 6.1 years ago by Assa Yeroslaviz ★ 1.5k

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rangedsummarizedexperiment deseqdatasetfrommatrix deseq2 tximport

6.6 years ago lirongrossmann ▴ 80

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deseq2 deseqdatasetfrommatrix rnaseq affy

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by matthew.sinton • 0

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deseq2 DESeqDataSetFromMatrix

updated 6.8 years ago by Michael Love 41k • written 6.8 years ago by zxy5139 • 0

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deseq2 deseqdatasetfrommatrix deseqdataset

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by jillian.waters • 0

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deseq2 DESeqDataSetFromMatrix software error

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by nazaninhoseinkhan • 0

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DESeqDataSetFromMatrix dds DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by naomi.croft • 0

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Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Comment: Help with error using camera() in limma by James W. MacDonald 65k

Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …

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C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

Answer: Help with error using camera() in limma

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