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Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 7 months ago by
DrFizz
• 0 • written 7 months ago by
melander
• 0
2
votes
6
replies
1.3k
views
Help me find the bug
DESeq2
HELP
13 months ago • updated 12 months ago
Michael
• 0
0
votes
4
replies
1.1k
views
Volcano plot becomes flipped when I add a third condition
DESeq2
volcanoplot
deseq
HELP
contrast
updated 13 months ago by
Basti
▴ 750 • written 13 months ago by
Michael
• 0
0
votes
2
replies
681
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
17 months ago
michela
▴ 20
3
votes
4
replies
1.2k
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
michela
▴ 20
0
votes
10
replies
1.5k
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
17 months ago
michela
▴ 20
0
votes
1
reply
543
views
Data visualization
HELP
Data
updated 18 months ago by
Guido Hooiveld
★ 3.9k • written 18 months ago by
mcclurejenniferc
• 0
2
votes
4
replies
1.7k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 13 months ago by
Rodrigo
▴ 10 • written 2.1 years ago by
Jessica
▴ 10
1
vote
2
replies
2.3k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
2.4 years ago
lexi.kellington
• 0
1
vote
9
replies
3.9k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 21 months ago by
Sanatan
• 0 • written 2.9 years ago by
dorina.jamniczky
• 0
3
votes
4
replies
1.3k
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
3.0 years ago
hgalmoore
• 0
0
votes
1
reply
2.0k
views
setup microbiome error
help
software error
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
mafusa20
• 0
0
votes
2
replies
979
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
rm1238
• 0
1
vote
4
replies
5.8k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 7.0 years ago by
Guangchuang Yu
★ 1.2k • written 7.0 years ago by
Mataivic
• 0
4
votes
5
replies
2.4k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 7.7 years ago by
Aaron Lun
★ 28k • written 7.7 years ago by
knipehf
• 0
0
votes
7
replies
1.8k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
7.7 years ago
fischer87
• 0
0
votes
2
replies
1.3k
views
help me to analysis my data
limma
help
updated 8.3 years ago by
svlachavas
▴ 830 • written 8.3 years ago by
libya.tahani
• 0
17 results • Page
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Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
Efra
• 0
I did as you told, and after running ```eset.annot <- annotateEset(eset, hugene11sttranscriptcluster.db)``` I got the next output: ``` 'se…
Comment: BioC2024 abstract submission is open!
by
howell
• 0
What are the conditions for approval of people in difficult circumstances? I want this scholarship
Comment: European Bioconductor Conference 2023 planning
by
william
• 0
[@MariaDoyle][1] Without a doubt. In that position, I will be included in the discussion. [1]: https://support.bioconductor.org/u/239…
Comment: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
Georg
• 0
Thank you for the detailed response. The code worked right away. I appreciate the quick response.
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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