Biostar Help

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188

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ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene

3 months ago michela ▴ 20

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438

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HELP HelloRanges

updated 3 months ago by James W. MacDonald 62k • written 3 months ago by michela ▴ 20

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566

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HELP ChIC.data PeakDetection ChipOnChipData

4 months ago • updated 3 months ago michela ▴ 20

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217

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HELP Data

updated 5 months ago by Guido Hooiveld ★ 3.5k • written 5 months ago by mcclurejenniferc • 0

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730

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STRINGdb HELP

updated 11 months ago by damian.szk ▴ 70 • written 11 months ago by Jessica ▴ 10

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1.1k

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HELP ChIPpeakAnno

15 months ago lexi.kellington • 0

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2.2k

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help DESeq2 DESeqDataSetFromMatrix rownames

updated 8 months ago by Sanatan • 0 • written 22 months ago by dorina.jamniczky • 0

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805

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RNASeqData RNASeq GEO RNASeqR HELP

22 months ago hgalmoore • 0

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1.6k

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help software error

updated 4.1 years ago by Martin Morgan 25k • written 4.1 years ago by mafusa20 • 0

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689

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limma time series help

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by rm1238 • 0

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4.5k

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clusterprofiler input files error help

updated 5.9 years ago by Guangchuang Yu ★ 1.2k • written 5.9 years ago by Mataivic • 0

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2.0k

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edger differential gene expression without replicate nested design help

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by knipehf • 0

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1.2k

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R deseq2 differential gene expression help

6.6 years ago fischer87 • 0

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983

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limma help

updated 7.2 years ago by svlachavas ▴ 800 • written 7.2 years ago by libya.tahani • 0

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Answer: nullranges by Michael Love 39k

Thanks for posting here. So you want to move the small RNA loci around the genome? Do they tend to cluster? For mouse or human genom…

Answer: Question about GWASTools gdsSubset by SuperD • 0

Have to define 'snp,scan' or 'scan,snp' for my case.

Comment: Not able to download recount3 data by Leonardo Collado Torres ★ 1.0k

Please don't reopen that issue thread, as it will ping lots of people. Can you try using the newly documented Amazon AWS mirror? ```R lib…

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thanks for all answers. I have tried, but still get an error message. Do you know how I can work around this? > library(pd.mir…

Answer: struggling to create a heatmap by ATpoint ★ 2.1k

I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…

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Significant reporter activity with mpralm function

Answer: I cannot install annotables package in Rstudio (macOS)

Answer: log2 of normalized counts for further analyzes

Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it

Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used

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Commentator to Lucia ▴ 40