Biostar Help

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STRINGdb HELP

updated 5 months ago by damian.szk ▴ 70 • written 5 months ago by Jessica • 0

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711

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HELP ChIPpeakAnno

9 months ago lexi.kellington • 0

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1.6k

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help DESeq2 DESeqDataSetFromMatrix rownames

updated 9 weeks ago by Sanatan • 0 • written 16 months ago by dorina.jamniczky • 0

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627

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RNASeqData RNASeq GEO RNASeqR HELP

16 months ago hgalmoore • 0

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1.5k

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help software error

updated 3.6 years ago by Martin Morgan 25k • written 3.6 years ago by mafusa20 • 0

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615

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limma time series help

updated 3.6 years ago by Aaron Lun ★ 27k • written 3.6 years ago by rm1238 • 0

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clusterprofiler input files error help

updated 5.4 years ago by Guangchuang Yu ★ 1.2k • written 5.4 years ago by Mataivic • 0

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1.9k

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edger differential gene expression without replicate nested design help

updated 6.1 years ago by Aaron Lun ★ 27k • written 6.1 years ago by knipehf • 0

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R deseq2 differential gene expression help

6.2 years ago • updated 6.1 years ago fischer87 • 0

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897

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limma help

updated 6.7 years ago by svlachavas ▴ 800 • written 6.7 years ago by libya.tahani • 0

10 results • Page 1 of 1

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Comment: Design and contrast matrices for analyzing the effect of two factors of interest by Gordon Smyth 46k

I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…

Comment: error running UniProt.ws by James W. MacDonald 60k

Or maybe it is a quick fix! Nicely done Marcel!

Answer: Error with TCGA package - TCGAbiolinks by Tiago C. Silva ▴ 220

It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …

Comment: Error with TCGA package - TCGAbiolinks by Marcel Ramos 570

You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…

Answer: error running UniProt.ws by Marcel Ramos 570

I've updated the package to handle these requests on both Bioc devel and release 3.15. Let me know if you have any issues. Best, M…

Votes

A: Importance of Order in Design Formula

remove microarray batch effects using Limma

On empirical Bayes of edgeR

Answer: CQN to DESeq2

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

Awards • All

Centurion to Marcel Ramos 570

Scholar to Gordon Smyth 46k