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Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
3 months ago
michela
▴ 20
3
votes
4
replies
438
views
why makeGRangesFromDataFrame don't do the IRange
HELP
HelloRanges
updated 3 months ago by
James W. MacDonald
62k • written 3 months ago by
michela
▴ 20
0
votes
10
replies
566
views
Peak annotation
HELP
ChIC.data
PeakDetection
ChipOnChipData
4 months ago • updated 3 months ago
michela
▴ 20
0
votes
1
reply
217
views
Data visualization
HELP
Data
updated 5 months ago by
Guido Hooiveld
★ 3.5k • written 5 months ago by
mcclurejenniferc
• 0
1
vote
1
reply
730
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 11 months ago by
damian.szk
▴ 70 • written 11 months ago by
Jessica
▴ 10
1
vote
2
replies
1.1k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP
ChIPpeakAnno
15 months ago
lexi.kellington
• 0
1
vote
9
replies
2.2k
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 8 months ago by
Sanatan
• 0 • written 22 months ago by
dorina.jamniczky
• 0
3
votes
4
replies
805
views
GEO + RNA-seq. Total Newbie.
RNASeqData
RNASeq
GEO
RNASeqR
HELP
22 months ago
hgalmoore
• 0
0
votes
1
reply
1.6k
views
setup microbiome error
help
software error
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
mafusa20
• 0
0
votes
2
replies
689
views
Design matrix choice for time series experiment using limma
limma
time series
help
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
rm1238
• 0
1
vote
4
replies
4.5k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler
input files
error
help
updated 5.9 years ago by
Guangchuang Yu
★ 1.2k • written 5.9 years ago by
Mataivic
• 0
4
votes
5
replies
2.0k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
knipehf
• 0
0
votes
7
replies
1.2k
views
DESeq2 with interest only for 1 gene
R
deseq2
differential gene expression
help
6.6 years ago
fischer87
• 0
0
votes
2
replies
983
views
help me to analysis my data
limma
help
updated 7.2 years ago by
svlachavas
▴ 800 • written 7.2 years ago by
libya.tahani
• 0
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Answer: nullranges
by
Michael Love
39k
Thanks for posting here. So you want to move the small RNA loci around the genome? Do they tend to cluster? For mouse or human genom…
Answer: Question about GWASTools gdsSubset
by
SuperD
• 0
Have to define 'snp,scan' or 'scan,snp' for my case.
Comment: Not able to download recount3 data
by
Leonardo Collado Torres
★ 1.0k
Please don't reopen that issue thread, as it will ping lots of people. Can you try using the newly documented Amazon AWS mirror? ```R lib…
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
• 0
Thanks for all answers. I have tried, but still get an error message. Do you know how I can work around this? > library(pd.mir…
Answer: struggling to create a heatmap
by
ATpoint
★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Votes
Significant reporter activity with mpralm function
Answer: I cannot install annotables package in Rstudio (macOS)
Answer: log2 of normalized counts for further analyzes
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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Guido Hooiveld
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