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help DESeq2 DESeqDataSetFromMatrix rownames

updated 6 months ago by Kevin Blighe 3.4k • written 6 months ago by dorina.jamniczky • 0

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RNASeqData RNASeq GEO RNASeqR HELP

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help software error

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limma time series help

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clusterprofiler input files error help

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edger differential gene expression without replicate nested design help

updated 5.3 years ago by Aaron Lun ★ 27k • written 5.3 years ago by knipehf • 0

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R deseq2 differential gene expression help

5.4 years ago • updated 5.3 years ago fischer87 • 0

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limma help

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Answer: pd.ragene.2.0 by James W. MacDonald 58k

`ragene20sttranscriptcluster.db` is what you want

Comment: TCL/TK in R by Bogdan ▴ 620

Hi James, thank you for your suggestions. I have re-installed R having the option **--with-tcltk** and BioC and did not help. Would you kn…

Answer: TCL/TK in R by James W. MacDonald 58k

As Mike already pointed out, this isn't a Bioconductor question. You could ask on R-help but they will most likely tell you that [it's alre…

Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs) by Guido Hooiveld ★ 3.0k

That should be: http://ftp.ebi.ac.uk/pub/databases/GO/goa/proteomes/4378222.W_seafood_market_pneumonia_virus_1.goa. Found through the GOA…

Answer: Ensuring reproducibility in BiocParallel SingleCellExperiment workflows by Aaron Lun ★ 27k

I don't think that setting `RNGseed` inside `MulticoreParam` does what anyone really expects. See the discussion in https://github.com/Bioc…

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Ensuring reproducibility in BiocParallel SingleCellExperiment workflows

Answer: How delete the AnnotationHub downloaded datasets

Answer: Error arrayQualityMetrics

Comment: Running the DESeq2 "DESeqDataSetFromMatrix" function returns a dimname error

Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)

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