Bioconductor Duplicate

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duplicate GenomicInteractions

5.7 years ago dogancan • 0

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deseq2 DESeqDataSetFromMatrix duplicate

updated 7.9 years ago by James W. MacDonald 68k • written 7.9 years ago by Assa Yeroslaviz ★ 1.5k

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msnbase duplicate rforproteomics

updated 8.1 years ago by Laurent Gatto 1.6k • written 8.1 years ago by joris.vanhoutven ▴ 10

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alignment duplicate

updated 9.1 years ago by Aaron Lun ★ 29k • written 9.1 years ago by Frocha ▴ 20

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r grangeslist duplicate

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by Jurat Shahidin ▴ 80

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getBM entrez gene identifiers duplicate rnaseq

9.1 years ago Jose Luis Soto Vázquez • 0

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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k

This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

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Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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