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Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
by
tahir.msajid
•
0
Hi Rory,
I came up with another question while analyzing my data.
A scenario of analysis: Path to bam files, path to peaks files (broad pe…
Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
by
Yang Shi
▴
10
Thanks for your reply sir! Here is the data ([EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv][1]). And there is the data process…
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
by
davidhillis
•
0
Thank you!
Comment: Time-course, comparison of two groups
by
boczniak767
▴
720
Thank you Gordon for your time and patience, I'd try to be more specific. I've read carefully the three first chapters of `edgeR` user guid…
Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va
by
James W. MacDonald
62k
This works for me.
```
> library(VariantAnnotation)
> library(TxDb.Hsapiens.UCSC.hg19.knownGene)
> txdb <- TxDb.Hsapiens.UCSC.hg19.knownGe…
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