Bioconductor DNAStringSet

Showing : DNAStringSet • reset

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1.1k

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dnastringset dnastringsetlist seqnames

6.9 years ago s.ghignone ▴ 10

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4.4k

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dnastringset list stringset

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by vinod.acear ▴ 50

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5.5k

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subseq Xvector dnastringset

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by Sophie • 0

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1.3k

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dnastringset aastringset

8.5 years ago XIA.PAN ▴ 20

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DNAstringset

updated 8.6 years ago by Hervé Pagès 16k • written 8.6 years ago by XIA.PAN ▴ 20

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6.2k

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dnastringset getseq

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by TimothéeFlutre ▴ 80

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pwmenrich dnastringset

updated 9.5 years ago by Robert Stojnic ▴ 50 • written 9.5 years ago by sekawaiwai2006 ▴ 20

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dnastringset parallel iterators

9.7 years ago ben.ward ▴ 30

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1.4k

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DNAStringSet sample

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by vinod.acear ▴ 50

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dnastringset

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by komal.rathi ▴ 120

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vcf testthat dnastringset

9.9 years ago TimothéeFlutre ▴ 80

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

10.4 years ago dan.gatti • 0

12 results • Page 1 of 1

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Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Votes

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to Assa Yeroslaviz ★ 1.5k