Bioconductor DNAStringSet

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1.1k

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dnastringset dnastringsetlist seqnames

6.8 years ago s.ghignone ▴ 10

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4.3k

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dnastringset list stringset

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by vinod.acear ▴ 50

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5.5k

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subseq Xvector dnastringset

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by Sophie • 0

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1.3k

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dnastringset aastringset

8.5 years ago XIA.PAN ▴ 20

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7.2k

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DNAstringset

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by XIA.PAN ▴ 20

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6.1k

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dnastringset getseq

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by TimothéeFlutre ▴ 80

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2.3k

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pwmenrich dnastringset

updated 9.4 years ago by Robert Stojnic ▴ 50 • written 9.4 years ago by sekawaiwai2006 ▴ 20

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1.8k

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dnastringset parallel iterators

9.7 years ago ben.ward ▴ 30

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1.4k

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DNAStringSet sample

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by vinod.acear ▴ 50

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20k

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dnastringset

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by komal.rathi ▴ 120

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2.3k

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vcf testthat dnastringset

9.8 years ago TimothéeFlutre ▴ 80

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5.0k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

10.4 years ago dan.gatti • 0

12 results • Page 1 of 1

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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

Votes

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

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