Showing : DNAStringSet • reset
2
votes
1
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1.2k
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset dnastringsetlist seqnames
7.1 years ago s.ghignone ▴ 10
3
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4
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4.5k
views
How to convert a DnaStringSet object to list of seq?
dnastringset list stringset
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 50
2
votes
5
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5.6k
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How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq Xvector dnastringset
updated 8.6 years ago by 16k • written 8.6 years ago by • 0
0
votes
2
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1.4k
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how to deal with multiple barcodes/index in the analysis
dnastringset aastringset
8.8 years ago XIA.PAN ▴ 20
6
votes
6
replies
7.3k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 8.8 years ago by 16k • written 8.8 years ago by ▴ 20
3
votes
1
reply
6.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset getseq
updated 9.4 years ago by 16k • written 9.4 years ago by ▴ 80
2
votes
3
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2.4k
views
visualing pwm motif on a DNAstring
pwmenrich dnastringset
updated 9.7 years ago by ▴ 50 • written 9.7 years ago by ▴ 20
0
votes
4
replies
1.9k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset parallel iterators
10.0 years ago ben.ward ▴ 30
0
votes
3
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1.5k
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I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet sample
updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 50
15
votes
2
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20k
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Extract sequence from DNAStringSet object
dnastringset
updated 10.1 years ago by 25k • written 10.1 years ago by ▴ 120
3
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8
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2.4k
views
problem with @ranges@start in DNAStringSet
vcf testthat dnastringset
10.1 years ago TimothéeFlutre ▴ 80
1
vote
5
replies
5.2k
views
Converting a DNAStringSetList to characters quickly
readVcf DNAStringSet DNAStringSetList variantannotation readvcf
10.7 years ago dan.gatti • 0
12 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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