Bioconductor DNAStringSet

Showing : DNAStringSet • reset

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1.1k

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dnastringset dnastringsetlist seqnames

6.9 years ago s.ghignone ▴ 10

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4.4k

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dnastringset list stringset

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by vinod.acear ▴ 50

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5.5k

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subseq Xvector dnastringset

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by Sophie • 0

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1.3k

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dnastringset aastringset

8.6 years ago XIA.PAN ▴ 20

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7.2k

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DNAstringset

updated 8.6 years ago by Hervé Pagès 16k • written 8.6 years ago by XIA.PAN ▴ 20

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6.2k

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dnastringset getseq

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by TimothéeFlutre ▴ 80

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2.3k

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pwmenrich dnastringset

updated 9.5 years ago by Robert Stojnic ▴ 50 • written 9.5 years ago by sekawaiwai2006 ▴ 20

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1.8k

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dnastringset parallel iterators

9.8 years ago ben.ward ▴ 30

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1.5k

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DNAStringSet sample

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by vinod.acear ▴ 50

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20k

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dnastringset

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by komal.rathi ▴ 120

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2.3k

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vcf testthat dnastringset

9.9 years ago TimothéeFlutre ▴ 80

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5.1k

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readVcf DNAStringSet DNAStringSetList variantannotation readvcf

10.5 years ago dan.gatti • 0

12 results • Page 1 of 1

Recent ...

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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