Showing : EBSeq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.6 years ago lli2 • 0
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3
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1.2k
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Heatmap for ebseq2 output
ebseq
5.6 years ago drkousi31 • 0
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1.2k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 6.5 years ago by ★ 28k • written 6.5 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
8.5 years ago jean.keller ▴ 10
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1.1k
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.6 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
9.2 years ago vieuphoria ▴ 10
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1.0k
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
9.4 years ago jbarker2 • 0
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1.6k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
9.5 years ago jackipchiho ▴ 10
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.7 years ago jbarker2 • 0
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2
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3.1k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.6 years ago by 67k • written 10.6 years ago by ▴ 10
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.7 years ago by ▴ 10 • written 10.7 years ago by 52k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 10.7 years ago by ▴ 10 • written 10.7 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
10.9 years ago Dario Strbenac ★ 1.5k
13 results • Page 1 of 1
Recent ...
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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