Showing : EBSeq • reset
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Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
7 months ago Javier • 0
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EBTest error please add gene/isoform names to the data matrix
EBSeq
5.5 years ago lli2 • 0
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Heatmap for ebseq2 output
ebseq
6.5 years ago drkousi31 • 0
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 7.4 years ago by ★ 29k • written 7.4 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
9.4 years ago jean.keller ▴ 10
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
9.5 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
10.1 years ago vieuphoria ▴ 10
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
10.4 years ago jbarker2 • 0
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
10.4 years ago jackipchiho ▴ 10
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
10.6 years ago jbarker2 • 0
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 11.5 years ago by 68k • written 11.5 years ago by ▴ 10
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.6 years ago by ▴ 10 • written 11.6 years ago by 53k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.6 years ago by ▴ 10 • written 11.6 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
11.9 years ago Dario Strbenac ★ 1.6k
14 results • Page 1 of 1
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Comment: Generalized edgeR functions by Omar • 0
[ragdoll hit](https://ragdollhitstickman.io/) That actually sounds like a reasonable approach, especially if the overlapping intervals repr…
Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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