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EBSeq
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.5 years ago
lli2
• 0
0
votes
3
replies
1.1k
views
Heatmap for ebseq2 output
ebseq
5.5 years ago
drkousi31
• 0
5
votes
1
reply
1.2k
views
DE analysis when large portion of transcriptome is changed
rna-seq
edger
ebseq
differential expression
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
marhabaie
• 0
0
votes
0
replies
1.1k
views
[EBSEQ] Strange NA values
ebseq
differential gene expression
8.4 years ago
jean.keller
▴ 10
0
votes
0
replies
1.1k
views
[EBSeq] Normalization and DE genes detection
ebseq
normalization
differential gene expression
8.5 years ago
jean.keller
▴ 10
1
vote
1
reply
1.3k
views
EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq
ebseq-hmm
rna-seq
9.1 years ago
vieuphoria
▴ 10
0
votes
0
replies
1.0k
views
Matching New Samples to Differential Expression Profile
differential expression
ebseq
rnaseq
9.4 years ago
jbarker2
• 0
0
votes
0
replies
1.5k
views
How to fully use the list of DEGs in non model species?
deseq2
gage
ebseq
rnaseq
9.4 years ago
jackipchiho
▴ 10
0
votes
2
replies
1.5k
views
EBSeq package gives NaN Values for EBMultiTest
differential expression
ebseq
rnaseq
9.6 years ago
jbarker2
• 0
0
votes
2
replies
3.1k
views
DE analysis with reference transcriptome
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
updated 10.5 years ago by
James W. MacDonald
67k • written 10.5 years ago by
Nicole Ertl
▴ 10
0
votes
1
reply
1.8k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.6 years ago by
Koji Kadota
▴ 10 • written 10.6 years ago by
Gordon Smyth
51k
0
votes
1
reply
2.0k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 10.6 years ago by
Jianqiang SUN
▴ 10 • written 10.6 years ago by
Pankaj Agarwal
▴ 100
0
votes
0
replies
1.2k
views
EBSeq Results Affected By Outlying Values
EBSeq
EBSeq
10.8 years ago
Dario Strbenac
★ 1.5k
13 results • Page
1 of 1
Recent ...
Replies
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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