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EBSeq
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288
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Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
9 months ago
Javier
• 0
0
votes
1
reply
937
views
EBTest error please add gene/isoform names to the data matrix
EBSeq
5.7 years ago
lli2
• 0
0
votes
3
replies
1.5k
views
Heatmap for ebseq2 output
ebseq
6.7 years ago
drkousi31
• 0
5
votes
1
reply
1.5k
views
DE analysis when large portion of transcriptome is changed
rna-seq
edger
ebseq
differential expression
updated 7.6 years ago by
Aaron Lun
★ 29k • written 7.6 years ago by
marhabaie
• 0
0
votes
0
replies
1.3k
views
[EBSEQ] Strange NA values
ebseq
differential gene expression
9.6 years ago
jean.keller
▴ 10
0
votes
0
replies
1.3k
views
[EBSeq] Normalization and DE genes detection
ebseq
normalization
differential gene expression
9.7 years ago
jean.keller
▴ 10
1
vote
1
reply
1.6k
views
EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq
ebseq-hmm
rna-seq
10.2 years ago
vieuphoria
▴ 10
0
votes
0
replies
1.2k
views
Matching New Samples to Differential Expression Profile
differential expression
ebseq
rnaseq
10.5 years ago
jbarker2
• 0
0
votes
0
replies
1.8k
views
How to fully use the list of DEGs in non model species?
deseq2
gage
ebseq
rnaseq
10.6 years ago
jackipchiho
▴ 10
0
votes
2
replies
1.8k
views
EBSeq package gives NaN Values for EBMultiTest
differential expression
ebseq
rnaseq
10.8 years ago
jbarker2
• 0
0
votes
2
replies
3.4k
views
DE analysis with reference transcriptome
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
updated 11.7 years ago by
James W. MacDonald
68k • written 11.7 years ago by
Nicole Ertl
▴ 10
0
votes
1
reply
2.0k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.8 years ago by
Koji Kadota
▴ 10 • written 11.8 years ago by
Gordon Smyth
53k
0
votes
1
reply
2.3k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.8 years ago by
Jianqiang SUN
▴ 10 • written 11.8 years ago by
Pankaj Agarwal
▴ 100
0
votes
0
replies
1.4k
views
EBSeq Results Affected By Outlying Values
EBSeq
EBSeq
12.0 years ago
Dario Strbenac
★ 1.6k
14 results • Page
1 of 1
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This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
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ATpoint
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Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
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Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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