Showing : EBSeq • reset
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EBTest error please add gene/isoform names to the data matrix
EBSeq
4.8 years ago lli2 • 0
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3
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1.2k
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Heatmap for ebseq2 output
ebseq
5.9 years ago drkousi31 • 0
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1.3k
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DE analysis when large portion of transcriptome is changed
rna-seq edger ebseq differential expression
updated 6.7 years ago by ★ 28k • written 6.7 years ago by • 0
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[EBSEQ] Strange NA values
ebseq differential gene expression
8.7 years ago jean.keller ▴ 10
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1.2k
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[EBSeq] Normalization and DE genes detection
ebseq normalization differential gene expression
8.9 years ago jean.keller ▴ 10
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EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq ebseq-hmm rna-seq
9.4 years ago vieuphoria ▴ 10
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Matching New Samples to Differential Expression Profile
differential expression ebseq rnaseq
9.7 years ago jbarker2 • 0
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1.6k
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How to fully use the list of DEGs in non model species?
deseq2 gage ebseq rnaseq
9.7 years ago jackipchiho ▴ 10
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1.5k
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EBSeq package gives NaN Values for EBMultiTest
differential expression ebseq rnaseq
9.9 years ago jbarker2 • 0
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2
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3.1k
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DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 10.9 years ago by 68k • written 10.9 years ago by ▴ 10
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TCC::ERROR: Need the design matrix for GLM
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.0 years ago by ▴ 10 • written 11.0 years ago by 52k
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TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression Normalization Cancer edgeR baySeq DESeq EBSeq TCC Normalization
updated 11.0 years ago by ▴ 10 • written 11.0 years ago by ▴ 100
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EBSeq Results Affected By Outlying Values
EBSeq EBSeq
11.2 years ago Dario Strbenac ★ 1.6k
13 results • Page 1 of 1
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Answer: DESeq2 by ATpoint ★ 4.8k
Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer, very useful!
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k
Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…
Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k
The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…
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Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
Comment: ComBat with repeated measures
Answer: Package developing and interoperation with Bioconductor
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
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