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EBSeq
•
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0
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replies
273
views
Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
8 months ago
Javier
• 0
0
votes
1
reply
925
views
EBTest error please add gene/isoform names to the data matrix
EBSeq
5.6 years ago
lli2
• 0
0
votes
3
replies
1.5k
views
Heatmap for ebseq2 output
ebseq
6.6 years ago
drkousi31
• 0
5
votes
1
reply
1.4k
views
DE analysis when large portion of transcriptome is changed
rna-seq
edger
ebseq
differential expression
updated 7.5 years ago by
Aaron Lun
★ 29k • written 7.5 years ago by
marhabaie
• 0
0
votes
0
replies
1.2k
views
[EBSEQ] Strange NA values
ebseq
differential gene expression
9.5 years ago
jean.keller
▴ 10
0
votes
0
replies
1.3k
views
[EBSeq] Normalization and DE genes detection
ebseq
normalization
differential gene expression
9.6 years ago
jean.keller
▴ 10
1
vote
1
reply
1.6k
views
EBSeq-HMM: retrieving expression paths for genes differing by time AND treatment
ebseq
ebseq-hmm
rna-seq
10.2 years ago
vieuphoria
▴ 10
0
votes
0
replies
1.2k
views
Matching New Samples to Differential Expression Profile
differential expression
ebseq
rnaseq
10.5 years ago
jbarker2
• 0
0
votes
0
replies
1.8k
views
How to fully use the list of DEGs in non model species?
deseq2
gage
ebseq
rnaseq
10.5 years ago
jackipchiho
▴ 10
0
votes
2
replies
1.7k
views
EBSeq package gives NaN Values for EBMultiTest
differential expression
ebseq
rnaseq
10.7 years ago
jbarker2
• 0
0
votes
2
replies
3.3k
views
DE analysis with reference transcriptome
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
Sequencing
GO
Organism
edgeR
DESeq
EBSeq
updated 11.6 years ago by
James W. MacDonald
68k • written 11.6 years ago by
Nicole Ertl
▴ 10
0
votes
1
reply
2.0k
views
TCC::ERROR: Need the design matrix for GLM
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.7 years ago by
Koji Kadota
▴ 10 • written 11.7 years ago by
Gordon Smyth
53k
0
votes
1
reply
2.3k
views
TCC::ERROR: Need the design matrix for GLM.
DifferentialExpression
Normalization
Cancer
edgeR
baySeq
DESeq
EBSeq
TCC
Normalization
updated 11.7 years ago by
Jianqiang SUN
▴ 10 • written 11.7 years ago by
Pankaj Agarwal
▴ 100
0
votes
0
replies
1.3k
views
EBSeq Results Affected By Outlying Values
EBSeq
EBSeq
11.9 years ago
Dario Strbenac
★ 1.6k
14 results • Page
1 of 1
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Replies
Answer: How to do differential expresion across time serise with edgeR?
by
Gordon Smyth
53k
You actually haven't done any DE analysis at all, you've just selected for genes with zero or large D0 counts. Another issue is that you a…
Answer: ATACseq rudimentary questions
by
Kevin Blighe
★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
by
Gordon Smyth
53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Empty boxes in treemap plot rrvgo package
by
TikTsokaasocissalpc
• 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Votes
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
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