Bioconductor EDA

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EDASeq EDA

16 months ago BioinfGuru ▴ 70

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norma EDASeq EDA Normalization

21 months ago samuel.channon • 0

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EDA pcaExplorer PCAtools PCA

updated 4.0 years ago by Miguel ▴ 20 • written 5.3 years ago by k.vitting.seerup ▴ 120

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deseq2 eda sva rna-seq

updated 9.3 years ago by Bernd Klaus ▴ 610 • written 9.3 years ago by g.atla ▴ 10

4 results • Page 1 of 1

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Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by TikTsoksocissalpc • 0

Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…

Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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