Bioconductor EPIC microarray

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champ epic microarray normalization minfi

7.6 years ago Laura • 0

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minfi epic microarray bioconductor

updated 3.4 years ago by Lucy • 0 • written 7.7 years ago by c.sae-lee2 • 0

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2.5k

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bioconductor methylation epic microarray champ

7.9 years ago csappleby-mallinder1 • 0

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2.2k

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methylation epic microarray minfi methylationepic

8.8 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.8 years ago chelsey.ju • 0

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rnbeads methylation illumina epic microarray

9.3 years ago rasii • 0

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 9.5 years ago by James W. MacDonald 68k • written 9.5 years ago by Biologist ▴ 120

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2.0k

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minfi methylation EPIC microarray illumina

updated 9.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.7 years ago by rasii • 0

8 results • Page 1 of 1

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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