Bioconductor EPIC microarray

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champ epic microarray normalization minfi

7.5 years ago Laura • 0

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minfi epic microarray bioconductor

updated 3.3 years ago by Lucy • 0 • written 7.6 years ago by c.sae-lee2 • 0

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2.5k

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bioconductor methylation epic microarray champ

7.8 years ago csappleby-mallinder1 • 0

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methylation epic microarray minfi methylationepic

8.7 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.7 years ago chelsey.ju • 0

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rnbeads methylation illumina epic microarray

9.2 years ago rasii • 0

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by Biologist ▴ 120

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2.0k

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minfi methylation EPIC microarray illumina

updated 9.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.5 years ago by rasii • 0

8 results • Page 1 of 1

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Answer: Integration: Paired-end vs healthy single-end from a different source by wba64023 • 0

Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…

Comment: Could we detect difference at pathway level but not significant different at gen by wba64023 • 0

thanks for sharing! [slope 2][1] [1]: https://slope2.online

Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0

The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0

It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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