Showing : EPIC microarray • reset
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ChAMP functional normalization error "subscript out of bounds"
champ epic microarray normalization minfi
7.7 years ago Laura • 0
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2
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1.7k
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Error in read.metharray.exp
minfi epic microarray bioconductor
updated 3.5 years ago by • 0 • written 7.8 years ago by • 0
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2
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2.6k
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Error code using ChAMP/Bioconductor, unable to load data from EPIC methylation array
bioconductor methylation epic microarray champ
8.0 years ago csappleby-mallinder1 • 0
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4
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2.2k
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minfi "mapToGenome" dimension error
methylation epic microarray minfi methylationepic
8.9 years ago nhejazi • 0
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Shinymethyl 850K Array quality control signal cutoffs
shinymethyl minfi epic microarray methylationepic qualitycontrol
8.9 years ago chelsey.ju • 0
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Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
9.4 years ago rasii • 0
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7
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dmpFinder return value (minfi)
minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray
updated 9.5 years ago by 68k • written 9.5 years ago by ▴ 120
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2.1k
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Error in Matrix
minfi methylation EPIC microarray illumina
updated 9.7 years ago by ★ 6.5k • written 9.7 years ago by • 0
8 results • Page 1 of 1
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Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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