Showing : EPICv2manifest • reset
0
votes
1
reply
477
views
Filtering out non-variable probes from EPICv2 matrix
DMRcate EPICv2manifest
updated 7 months ago by 68k • written 7 months ago by • 0
1
vote
2
replies
1.4k
views
CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2 EPICv2manifest
8 months ago Joshua Llano • 0
0
votes
2
replies
660
views
Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
0
replies
351
views
Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
10 months ago charlie.wright • 0
0
votes
2
replies
644
views
MissMethyl failed to use gometh function for EPICv2
missMethyl EPICv2manifest
updated 11 months ago by 68k • written 11 months ago by • 0
1
vote
2
replies
560
views
Epic v2 Annotation CpG_maf source?
MethylationArray methy EPICv2manifest
12 months ago Meghan • 0
2
votes
2
replies
782
views
preprocessIllumina error with EPICv2 array
minfi EPICv2manifest
12 months ago Rakesh • 0
0
votes
0
replies
505
views
EPIC v2 annotation and BigWig
EPICv2manifest IlluminaHumanMethylationEPICv2anno.20a1.hg38
17 months ago MajaVu • 0
0
votes
0
replies
720
views
Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi EPICv2manifest MethylAid
17 months ago pcibin • 0
1
vote
4
replies
2.4k
views
SeSAMe DMR for EPIC V2
sesame EPICv2manifest epicv2
updated 4 months ago by • 0 • written 17 months ago by ▴ 50
1
vote
3
replies
3.0k
views
CombineArrays for EPIC and EPIC V2
EPICV1 Methylation combineArrays minifi EPICv2manifest
updated 14 months ago by • 0 • written 20 months ago by • 0
1
vote
6
replies
1.7k
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 20 months ago by ▴ 230 • written 20 months ago by • 0
12 results • Page 1 of 1
Recent ...
Replies
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.2k
Locations • All
United States, 13 minutes ago
The city by the bay, 43 minutes ago
United States, 1 hour ago
Austria, 1 hour ago
Germany, 2 hours ago
Traffic: 596 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6