Bioconductor EPICv2manifest

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440

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EPICv2 EPICv2manifest

updated 4 days ago by James W. MacDonald 68k • written 5 days ago by Joshua Llano • 0

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193

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conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest

updated 21 days ago by James W. MacDonald 68k • written 21 days ago by luca.mangherini • 0

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210

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minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest

6 weeks ago charlie.wright • 0

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357

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missMethyl EPICv2manifest

updated 11 weeks ago by James W. MacDonald 68k • written 11 weeks ago by maximuscfyeung • 0

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399

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MethylationArray methy EPICv2manifest

4 months ago • updated 3 months ago Meghan • 0

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479

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minfi EPICv2manifest

4 months ago Rakesh • 0

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355

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EPICv2manifest IlluminaHumanMethylationEPICv2anno.20a1.hg38

8 months ago MajaVu • 0

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498

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minfi EPICv2manifest MethylAid

8 months ago pcibin • 0

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1.4k

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sesame EPICv2manifest epicv2

9 months ago luca.s ▴ 50

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2.3k

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EPICV1 Methylation combineArrays minifi EPICv2manifest

updated 5 months ago by rania.alanany • 0 • written 11 months ago by Kim • 0

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1.2k

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 11 months ago by Tim Peters ▴ 230 • written 11 months ago by s.malik • 0

11 results • Page 1 of 1

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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k

Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…

Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…

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Answer: Merging annotation with differential expression output

Answer: Explannation for ROAST results

Comment: Limma comparing gene expression between base line and one treatment

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

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