Showing : EPICv2manifest • reset
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Filtering out non-variable probes from EPICv2 matrix
DMRcate EPICv2manifest
updated 8 months ago by 68k • written 8 months ago by • 0
1
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2
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1.4k
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CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2 EPICv2manifest
10 months ago • updated 9 months ago Joshua Llano • 0
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2
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793
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Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 10 months ago by 68k • written 10 months ago by • 0
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376
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
11 months ago charlie.wright • 0
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2
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720
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MissMethyl failed to use gometh function for EPICv2
missMethyl EPICv2manifest
updated 12 months ago by 68k • written 12 months ago by • 0
1
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2
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596
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Epic v2 Annotation CpG_maf source?
MethylationArray methy EPICv2manifest
14 months ago • updated 13 months ago Meghan • 0
2
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2
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851
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preprocessIllumina error with EPICv2 array
minfi EPICv2manifest
14 months ago Rakesh • 0
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0
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541
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EPIC v2 annotation and BigWig
EPICv2manifest IlluminaHumanMethylationEPICv2anno.20a1.hg38
18 months ago MajaVu • 0
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0
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773
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Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi EPICv2manifest MethylAid
18 months ago pcibin • 0
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4
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2.6k
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SeSAMe DMR for EPIC V2
sesame EPICv2manifest epicv2
updated 6 months ago by • 0 • written 19 months ago by ▴ 50
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3
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3.2k
views
CombineArrays for EPIC and EPIC V2
EPICV1 Methylation combineArrays minifi EPICv2manifest
updated 15 months ago by • 0 • written 21 months ago by • 0
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6
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1.8k
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unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 21 months ago by ▴ 230 • written 21 months ago by • 0
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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k
Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/
Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k
apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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