Bioconductor EdgeR

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154

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fgsea edgeR

updated 14 hours ago by Gordon Smyth 50k • written 22 hours ago by gene_bioconductor ▴ 10

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RNASeqData edgeR

updated 18 hours ago by Gordon Smyth 50k • written 23 hours ago by z_bahari • 0

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163

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edgeR

updated 9 days ago by Gordon Smyth 50k • written 9 days ago by k___ ▴ 30

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409

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edgeR

16 days ago • updated 11 days ago Jonathan ▴ 10

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326

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rna-seq edgeR

updated 12 days ago by Gordon Smyth 50k • written 25 days ago by Netanel • 0

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1.6k

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salmon edgeR tximport nf-core gene_counts

updated 14 days ago by i.atanasoai • 0 • written 15 months ago by mohammedtoufiq91 ▴ 10

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178

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subsettingdata edgeR designmatrix

updated 14 days ago by Gordon Smyth 50k • written 15 days ago by prity6459 • 0

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127

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DGEList edgeR

14 days ago prity6459 • 0

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165

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limma edgeR RNASeq

updated 14 days ago by Gordon Smyth 50k • written 15 days ago by Shaimaa Gamal • 0

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7.8k

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deseq2 edgeR rna-seq

updated 15 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

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343

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limmaGUI edgeR limma

updated 18 days ago by Gordon Smyth 50k • written 23 days ago by Simran • 0

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417

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edgeR DifferentialExpression

updated 20 days ago by ATpoint ★ 4.1k • written 24 days ago by nhaus ▴ 30

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243

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edgeR DifferentialExpression

updated 27 days ago by James W. MacDonald 65k • written 28 days ago by Shaimaa Gamal • 0

13 results • Page 1 of 1

Recent ...

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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Votes

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

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