Bioconductor FeatureCounts

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6.1k

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rsubread featurecounts

updated 12 weeks ago by Gordon Smyth 50k • written 9.1 years ago by Ryan C. Thompson ★ 7.9k

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744

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featurecounts Rsubread

3 months ago isaac.vock • 0

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1.6k

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rsubread featurecounts summarizeoverlaps

updated 4 weeks ago by isaac.vock • 0 • written 7.9 years ago by Jon Manning ▴ 90

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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437

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featureCounts Rsubread

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by tjgray4 • 0

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18k

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featurecounts rsubread

updated 10 months ago by Robert • 0 • written 9.0 years ago by samuel collombet ▴ 140

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4.7k

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subread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 2.8 years ago by s.muroy ▴ 10

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862

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Bioconductor Rsubread featureCounts

updated 11 months ago by Wei Shi ★ 3.6k • written 12 months ago by Carlos • 0

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660

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Rsubread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 9 months ago by StevenE.Strong • 0

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259

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featureCounts Rsubread

updated 8 weeks ago by Wei Shi ★ 3.6k • written 12 weeks ago by Alex • 0

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941

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rpkm edgeR featureCounts

8 months ago Gordon Smyth 50k

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142

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FeatureCounts Rsubread

8 weeks ago chris2.a.white • 0

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2.3k

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featurecounts SAM htseqcounts

updated 9 months ago by Yang Liao ▴ 380 • written 7.0 years ago by courtney.stairs • 0

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1.0k

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RNASeqData Rsubread mapping featurecounts

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by vitoriastavis • 0

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248

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featureCounts Rsubread

4 weeks ago • updated 12 days ago isaac.vock • 0

15 results • Page 1 of 1

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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

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Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

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Scholar to Rory Stark ★ 5.2k

Popular Question to tangming2005 ▴ 190