Bioconductor FeatureCounts

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247

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featureCounts Rsubread

4 weeks ago • updated 12 days ago isaac.vock • 0

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140

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FeatureCounts Rsubread

8 weeks ago chris2.a.white • 0

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258

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featureCounts Rsubread

updated 8 weeks ago by Wei Shi ★ 3.6k • written 12 weeks ago by Alex • 0

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6.1k

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rsubread featurecounts

updated 12 weeks ago by Gordon Smyth 50k • written 9.1 years ago by Ryan C. Thompson ★ 7.9k

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432

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featureCounts Rsubread

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by tjgray4 • 0

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743

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featurecounts Rsubread

3 months ago isaac.vock • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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939

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rpkm edgeR featureCounts

8 months ago Gordon Smyth 50k

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1.0k

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RNASeqData Rsubread mapping featurecounts

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by vitoriastavis • 0

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659

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Rsubread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 9 months ago by StevenE.Strong • 0

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859

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Bioconductor Rsubread featureCounts

updated 11 months ago by Wei Shi ★ 3.6k • written 12 months ago by Carlos • 0

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4.7k

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subread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 2.8 years ago by s.muroy ▴ 10

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2.3k

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featurecounts SAM htseqcounts

updated 9 months ago by Yang Liao ▴ 380 • written 7.0 years ago by courtney.stairs • 0

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1.6k

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rsubread featurecounts summarizeoverlaps

updated 4 weeks ago by isaac.vock • 0 • written 7.9 years ago by Jon Manning ▴ 90

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18k

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featurecounts rsubread

updated 10 months ago by Robert • 0 • written 9.0 years ago by samuel collombet ▴ 140

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Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

Comment: Store output of matchPWM() by James W. MacDonald 65k

Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…

Comment: DEseq2 coefficient by JKim • 0

Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…

Comment: Store output of matchPWM() by mat149 ▴ 70

out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) Error in do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) : '…

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SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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