Showing : GAGE package • reset
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GAGE for non model organism
gage package gage
6.8 years ago melkile26 • 0
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2
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1.5k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.8 years ago atakanekiz ▴ 30
5
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7
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3.2k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 7.0 years ago by 68k • written 7.0 years ago by ▴ 20
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2
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4.2k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 3.1 years ago by • 0 • written 7.2 years ago by • 0
2
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4
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2.4k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 7.7 years ago by 52k • written 7.7 years ago by ▴ 30
1
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0
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1.7k
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DESeq2 - GAGE workflow
gage package deseq2
7.7 years ago sup230 ▴ 30
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1.9k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by • 0
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2
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
8.7 years ago joanito.liberti • 0
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1.1k
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Question on Gage
gage package path.ids RNA-Seq
8.7 years ago rl1385 • 0
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1.1k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
8.8 years ago smt8n • 0
10 results • Page 1 of 1
Recent ...
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Comment: Intepretation of results by Tom • 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis by Tom • 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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