Showing : GAGE package • reset
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GAGE for non model organism
gage package gage
7.5 years ago melkile26 • 0
1
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2
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1.7k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
7.5 years ago atakanekiz ▴ 30
5
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7
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3.4k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 20
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2
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4.7k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 3.9 years ago by • 0 • written 7.9 years ago by • 0
2
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4
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2.9k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 8.4 years ago by 53k • written 8.4 years ago by ▴ 30
1
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0
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1.9k
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DESeq2 - GAGE workflow
gage package deseq2
8.5 years ago sup230 ▴ 30
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2
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2.2k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 9.2 years ago by ★ 1.6k • written 9.3 years ago by • 0
1
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2
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1.9k
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
9.4 years ago joanito.liberti • 0
0
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1
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1.3k
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Question on Gage
gage package path.ids RNA-Seq
9.5 years ago rl1385 • 0
0
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0
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1.3k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
9.6 years ago smt8n • 0
10 results • Page 1 of 1
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …
Answer: Bile acid analysis with limpa by Gordon Smyth 53k
I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …
Comment: How to convert .raw data for use in xcms by TikTsossa33ssalpc • 0
It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…
Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0
To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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