Showing : GAGE package • reset
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GAGE for non model organism
gage package gage
7.5 years ago melkile26 • 0
1
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2
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1.7k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
7.5 years ago atakanekiz ▴ 30
5
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7
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3.4k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 20
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2
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4.7k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 3.9 years ago by • 0 • written 7.9 years ago by • 0
2
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4
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2.9k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 8.4 years ago by 53k • written 8.4 years ago by ▴ 30
1
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0
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1.9k
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DESeq2 - GAGE workflow
gage package deseq2
8.5 years ago sup230 ▴ 30
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2
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2.2k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 9.2 years ago by ★ 1.6k • written 9.3 years ago by • 0
1
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2
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1.9k
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
9.4 years ago joanito.liberti • 0
0
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1
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1.3k
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Question on Gage
gage package path.ids RNA-Seq
9.5 years ago rl1385 • 0
0
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0
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1.3k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
9.6 years ago smt8n • 0
10 results • Page 1 of 1
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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
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I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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