Showing : GAGE package • reset
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GAGE for non model organism
gage package gage
6.3 years ago melkile26 • 0
1
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2
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1.4k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.4 years ago atakanekiz ▴ 30
5
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7
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3.0k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 6.5 years ago by 67k • written 6.5 years ago by ▴ 20
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2
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4.0k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 2.7 years ago by • 0 • written 6.8 years ago by • 0
2
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4
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2.1k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 7.3 years ago by 51k • written 7.3 years ago by ▴ 30
1
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0
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1.6k
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DESeq2 - GAGE workflow
gage package deseq2
7.3 years ago sup230 ▴ 30
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2
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1.8k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 8.1 years ago by ★ 1.6k • written 8.1 years ago by • 0
1
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2
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1.6k
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
8.3 years ago joanito.liberti • 0
0
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1
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1.1k
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Question on Gage
gage package path.ids RNA-Seq
8.3 years ago rl1385 • 0
0
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1.0k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
8.4 years ago smt8n • 0
10 results • Page 1 of 1
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Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160
It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…
Comment: makeContrastsDream for Interaction by gabriel.hoffman ▴ 160
The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…
Answer: DESeq2 sizefactors counfounded with biological treatment by James W. MacDonald 67k
Your question is off-topic for this site, which is primarily intended to help people with technical issues with Bioconductor packages rathe…
Comment: Epic v2 Annotation CpG_maf source? by Meghan • 0
Thank you, so much, for this reply!
Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by remi-xavier.coux ▴ 10
That indeed worked, thanks a lot for the help (and for karyoploteR)
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Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
Answer: Epic v2 Annotation CpG_maf source?
Answer: bioconductor packages on bioconda
Filtering low variance genes for WGCNA
A: Filtering low variance genes for WGCNA
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