Bioconductor GO

Showing : GO • reset

votes

replies

3.7k

views

clusterProfiler GO GO enrichment genesetenrichment

updated 6 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

votes

252

views

DNAMethylation GO MethylationArray missMethyl EPICv2

updated 8 weeks ago by belinda.phipson ▴ 40 • written 8 weeks ago by s.malik • 0

vote

replies

345

views

GO limma CAMERA

updated 11 weeks ago by Gordon Smyth 50k • written 11 weeks ago by Tyler Sagendorf ▴ 10

votes

replies

5.0k

views

clusterProfiler AnnotationHub GO uniprot

updated 12 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

votes

replies

399

views

GO EnrichmentBrowser

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by prity6459 • 0

votes

replies

554

views

GO ensembldb

6 months ago Rockbar • 0

vote

420

views

go DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Alvin • 0

votes

618

views

GO biomaRt

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by cstorer • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

Votes

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

Awards • All

Popular Question to gene_bioconductor ▴ 10

Popular Question to rohitsatyam102 ▴ 20