Showing : GOstats • reset
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hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 80
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GOStats question
GO GOstats GO GOstats
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 570
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3
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views
Can't get RCurl...
GO Survival annotate genefilter affy graph limma GOstats biomaRt Category affycoretools
updated 18.7 years ago by 68k • written 18.7 years ago by ★ 2.2k
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651
views
Annotation parameter of hyperGTest
Microarray Annotation GOstats Microarray Annotation GOstats
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 10
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1
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views
Why not protein ids for GO resp. GOstats?
Annotation GO GOstats Annotation GO GOstats
updated 18.8 years ago by ★ 5.5k • written 18.8 years ago by ▴ 10
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2
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views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
18.8 years ago Mark W Kimpel ▴ 830
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4
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1.8k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 18.8 years ago by ★ 13k • written 18.8 years ago by ▴ 830
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1
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views
problems with library goCluster
GO goTools GOstats goCluster GO goTools GOstats goCluster
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 40
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6
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2.2k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 18.9 years ago by 21k • written 18.9 years ago by ▴ 310
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2
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2.0k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 19.0 years ago by 68k • written 19.0 years ago by ▴ 890
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1
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1.2k
views
GOENTREZID2GO hard-coded in GOstats:makeGOGraph
Annotation GO Network Yeast graph GOstats Annotation GO Network Yeast graph GOstats
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ★ 1.1k
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7
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1.8k
views
Odds Ratio in GOstat [resolved?]
GOstats Category GOstats Category
updated 19.0 years ago by ★ 6.0k • written 19.0 years ago by ★ 7.4k
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5
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2.2k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 890
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6
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2.7k
views
GOstats and KEGG
Pathways GO GOstats Pathways GO GOstats
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 190
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0
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1.4k
views
question_gene list from venn diagram limma function for two color array data
Microarray Annotation Cancer GOstats affycoretools Microarray Annotation Cancer GOstats
19.1 years ago James W. MacDonald 68k
0
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1
reply
914
views
reference question
AnnBuilder GOstats AnnBuilder GOstats
updated 19.2 years ago by ★ 13k • written 19.2 years ago by ▴ 310
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3
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2.4k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 350
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931
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about packages GO, Gostats,...
GO GOstats Category GO GOstats Category
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 70
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2
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1.3k
views
GOstats and library ath1121501
ath1121501 hgu95av2 GOstats ath1121501 hgu95av2 GOstats
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 70
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1
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1.5k
views
GO annotation/analysis for ath1121501
Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools
updated 19.3 years ago by ▴ 870 • written 19.3 years ago by ▴ 340
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3
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1.7k
views
hypergeometric enrichment of GO terms
Microarray GO GOstats biomaRt Microarray GO GOstats biomaRt
updated 19.3 years ago by ★ 13k • written 19.3 years ago by ▴ 30
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2
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1.4k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 10
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0
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652
views
Question about the appropriate uniververse for GOHyperG or hyperGtable
GOstats GOstats
19.5 years ago Seth Falcon ★ 7.4k
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2
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1.8k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
19.5 years ago Kimpel, Mark W ▴ 890
0
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11
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2.6k
views
GOstats and GenePix arrays
GO GOstats GO GOstats
19.6 years ago Jacob Michaelson ▴ 320
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1
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1.1k
views
Build an Annotation with GO2ALLPROBES
Genetics Annotation AnnBuilder GOstats Genetics Annotation AnnBuilder GOstats
updated 19.7 years ago by ▴ 780 • written 19.7 years ago by ▴ 20
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0
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723
views
[R] Problem using GOstats package in R 2.2.1
Microarray GO Cancer GOstats Microarray GO Cancer GOstats
19.7 years ago James W. MacDonald 68k
0
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1
reply
1.3k
views
Issues with BioC GO annotations and NetAffx
Annotation GO probe affy PROcess GOstats Category Annotation GO probe affy PROcess
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 110
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12
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2.9k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
19.8 years ago michael watson IAH-C ★ 3.4k
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2
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850
views
Run GOHyperG without specifying a chip
GOstats GOstats
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 50
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0
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794
views
problems with GO package data
GO Cancer hgu95av2 probe Biobase annotate genefilter multtest graph GOstats GO Cancer
19.8 years ago Yu-An Dong ▴ 40
0
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1
reply
1.2k
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 890
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1
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1.1k
views
GOstats/tkWidgets/gcrma conflict
tkWidgets gcrma matchprobes GOstats tkWidgets gcrma matchprobes GOstats
updated 20.0 years ago by 25k • written 20.0 years ago by ▴ 80
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UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
20.2 years ago Shi, Tao ▴ 720
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0
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776
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were are the XML and xtable packages?
GOstats widgetInvoke GOstats widgetInvoke
20.4 years ago Seth Falcon ★ 7.4k
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6
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2.1k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ★ 1.4k
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4
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1.7k
views
Error with Rgraphviz
GOstats GOstats
updated 20.5 years ago by ★ 7.4k • written 20.5 years ago by ▴ 300
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0
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1.0k
views
error with the function GOHyperG from GOstats package
GO GOstats GO GOstats
20.6 years ago Sabrina Carpentier ▴ 70
0
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6
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1.7k
views
.pdf files of GOstats documents
GOstats GOstats
updated 20.8 years ago by ★ 3.4k • written 20.8 years ago by ▴ 720
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2
replies
1.2k
views
GOstats
GOstats GOstats
updated 20.9 years ago by 21k • written 20.9 years ago by ▴ 100
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0
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779
views
Bug in function hasGOannote() form GOstats package
GOstats GOstats
21.1 years ago Adrian Alexa ▴ 400
0
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9
replies
1.9k
views
Rgraphviz for Windows
Rgraphviz GOstats Rgraphviz GOstats
updated 21.3 years ago by ★ 3.9k • written 21.3 years ago by ▴ 20
0
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1
reply
1.2k
views
GO package for GOstats
GO GOstats GO GOstats
updated 21.3 years ago by ★ 3.9k • written 21.3 years ago by ▴ 20
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10
replies
5.4k
views
GOStat and multiple testing
GO GOstats GO GOstats
updated 21.3 years ago by ▴ 810 • written 21.3 years ago by ▴ 620
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2
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1.4k
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 21.3 years ago by ★ 5.5k • written 21.3 years ago by ▴ 320
0
votes
1
reply
916
views
GoHyperG question
GO GOstats Category GO GOstats Category
updated 21.3 years ago by ★ 2.9k • written 21.3 years ago by ▴ 10
0
votes
1
reply
770
views
problem dwnloading GOstats
GO GOstats GO GOstats
updated 21.4 years ago by ★ 5.5k • written 21.4 years ago by ▴ 60
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1
reply
1.1k
views
cant draw GO graph labels
GOstats GOstats
updated 21.4 years ago by ★ 3.9k • written 21.4 years ago by ▴ 10
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2
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1.4k
views
(no subject)
GO GOstats GO GOstats
updated 21.4 years ago by ▴ 10 • written 21.4 years ago by ▴ 300
0
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1
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985
views
Error loading GOstats
GOstats GOstats
updated 21.5 years ago by ★ 3.9k • written 21.5 years ago by ▴ 620
250 results • Page 5 of 5
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The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
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It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
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I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
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Answered here: https://support.bioconductor.org/p/16318/
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Thank you very much! will take that into consideration
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Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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