Showing : GSEa • reset
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The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea gsea
7 weeks ago • updated 5 weeks ago Gordon • 0
2
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1
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220
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Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
updated 7 weeks ago by ★ 3.9k • written 7 weeks ago by ▴ 10
4
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3
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241
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Problem converting msigdb Human symbols to Zebrafish in gmt format
msigdb gmt GSEA
written 7 weeks ago by • 0
0
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1
reply
629
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choosing rank for GSEA
gsea DESeq2
updated 6 months ago by ★ 4.1k • written 6 months ago by • 0
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3
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1.3k
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gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 6 months ago by • 0 • written 9 months ago by • 0
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0
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630
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using fgsea to compare two datasets
GSEA fgsea
9 months ago Cen • 0
1
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1
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1.0k
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How to do GSEA over limma + voom DGE ?
GSEA voom limma
updated 10 months ago by 50k • written 10 months ago by • 0
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13
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6.7k
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GSEA many significant gene sets despite no differentially expressed genes
GSEA GeneSetEnrichment DifferentialExpression
updated 3 months ago by ★ 4.1k • written 2.2 years ago by ▴ 30
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4
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1.7k
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EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
updated 4 days ago by ▴ 10 • written 7.4 years ago by ▴ 190
9 results • Page 1 of 1
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Comment: ChAMP installation issue by shepherl 3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Answer: Gene set enrichment analysis by Guido Hooiveld ★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by zzrammal • 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ziliang • 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont by Denis • 0
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differential expression for Single-cell RNAseq data using edgeR
Why p value inconsistent when using different number of pathway score?
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: minfi latest update for EPIC V2 chip
A: AIC-like measure for DESeq2
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