Showing : Genetics • reset
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BioC 2010 Conference Update
Sequencing SAGE Genetics Sequencing SAGE Genetics
15.6 years ago Martin Morgan 25k
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1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
15.7 years ago David Lyon ▴ 340
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism probe biocViews AnnotationDbi BiocViews GO
15.7 years ago Marc Carlson ★ 7.2k
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism biocViews AnnotationDbi BiocViews BiocViews GO
15.7 years ago Julian Lee ▴ 10
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R functions for genetic distances
SNP Genetics convert SNP Genetics convert
15.7 years ago Waddell, Peter J ▴ 10
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2.6k
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Two bioinformatics positions in Bordeaux, France
SNP Sequencing Genetics Cancer Breast SNP Sequencing Genetics Cancer Breast
15.7 years ago Audrey Kauffmann ▴ 110
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'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics Clustering DECIPHER Genetics Clustering DECIPHER
15.8 years ago Radek Blatny ▴ 60
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1.2k
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help on reading Agilent 44k 2 colour
Genetics limma Genetics limma
updated 15.9 years ago by ▴ 190 • written 15.9 years ago by ▴ 60
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Computational Biology Positions at EMBL (Heidelberg)
Sequencing Genetics genomes Sequencing Genetics genomes
15.9 years ago Wolfgang Huber ★ 13k
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landscape genetics analysis
Genetics Genetics
15.9 years ago milton ruser ▴ 20
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Job posting: Bioinformatician (2), The Netherlands
Genetics Genetics
16.0 years ago Menezes, R. ▴ 10
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reproducibility between reads?
Microarray Genetics Microarray Genetics
16.0 years ago Naomi Altman ★ 6.0k
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Statistical Position Supporting Systems Biology
Genetics Proteomics Genetics Proteomics
16.0 years ago Max Kuhn ▴ 60
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Seeking assistance on ROC
Genetics ROC Genetics ROC
16.0 years ago Susan Bosco ▴ 80
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1.1k
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problem with qPCR raw data
Genetics Genetics
updated 16.0 years ago by ★ 2.0k • written 16.0 years ago by ▴ 60
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1.1k
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Help on ROCR analysis
Genetics ASSIGN Genetics ASSIGN
updated 16.1 years ago by ★ 13k • written 16.1 years ago by ▴ 80
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980
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Help on ROC analysis
Genetics MEDME ASSIGN Genetics MEDME ASSIGN
16.1 years ago Susan Bosco ▴ 80
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1.2k
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Position for Computational Scientist at EMBL
Sequencing Genetics genomes Sequencing Genetics genomes
16.1 years ago Wolfgang Huber ★ 13k
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1.5k
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Help on ROC Analysis
Genetics ROC MEDME Genetics ROC MEDME
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 80
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Help to understand logistic model used in MEDME
Genetics MEDME Genetics MEDME
updated 16.2 years ago by ★ 4.2k • written 16.2 years ago by ▴ 80
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Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing Genetics Classification Cancer PROcess Sequencing Genetics Classification
16.3 years ago Reek, J. ▴ 10
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Post-Doctoral research position at the Leibniz Institute of Arteriosclerosis Research at the University of Muenster
Genetics Genetics
16.3 years ago Christoph Preuss ▴ 20
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POSTDOC in SYSTEMS GENETICS at Cancer Research UK Cambridge Research Institute
Genetics Cancer Breast Lung Genetics Cancer Breast Lung
16.5 years ago Florian Markowetz ▴ 20
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1.2k
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problem with the structure of a list of pathways
Genetics Pathways probe annaffy Genetics Pathways probe annaffy
updated 16.6 years ago by 68k • written 16.6 years ago by ▴ 60
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problems loading imagene data with limma
Genetics limma Genetics limma
16.7 years ago Ingunn Berget ▴ 150
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780
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Analysing RNA-seq data
Genetics Genetics
updated 17.0 years ago by ▴ 20 • written 17.0 years ago by 53k
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SNP analysis
Genetics Genetics
updated 17.0 years ago by ▴ 900 • written 17.0 years ago by ▴ 10
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Analysing RNA-seq data
Genetics Genetics
updated 17.0 years ago by ▴ 620 • written 17.0 years ago by ▴ 150
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[JOB] National Cancer Institute, Bethesda, MD
Sequencing miRNA Microarray Genetics Cancer Sequencing miRNA Microarray Genetics Cancer
17.0 years ago Sean Davis 21k
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retrieve genomic coordinates of FASTA file
Genetics Genetics
updated 17.0 years ago by 68k • written 17.0 years ago by ▴ 500
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1.8k
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Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 17.0 years ago by 21k • written 17.0 years ago by ▴ 360
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A CGH platform question
SNP Genetics Coverage CGH affy SNP Genetics Coverage CGH affy
updated 17.1 years ago by ★ 2.4k • written 17.1 years ago by ▴ 70
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2.8k
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forward conditional Cox and logistic regression
Genetics Regression Survival Genetics Regression Survival
updated 17.1 years ago by ★ 2.3k • written 17.1 years ago by ▴ 130
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Fwd: snapCGH: "Error in segments(...
Genetics graph Genetics graph
17.2 years ago Radek Blatny ▴ 30
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853
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snapCGH: "Error in segments(...
Genetics Genetics
17.2 years ago Radek Blatny ▴ 30
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Symposium announcement
Genetics Genetics
17.2 years ago Guilherme J. M. Rosa ▴ 20
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1.0k
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find indels with Biostrings package
Genetics Genetics
updated 17.3 years ago by ★ 1.6k • written 17.3 years ago by ▴ 500
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1.6k
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R-genetics and Bioconductor for quantitative genetics
Genetics GeneticsPed Genetics GeneticsPed
updated 17.3 years ago by 6.7k • written 17.3 years ago by ▴ 320
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Postdoc positions at the Cancer Research UK Cambridge Research Institute
SNP Genetics Pathways Cancer CGH microRNA SNP Genetics Pathways Cancer CGH microRNA
17.3 years ago Florian Markowetz ▴ 20
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Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
17.4 years ago Ludo Muller ▴ 50
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2.4k
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allen brain atlas
Genetics Annotation BRAIN Genetics Annotation BRAIN
updated 17.4 years ago by 25k • written 17.4 years ago by ▴ 60
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1.9k
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Sc03b_MR_v04 CDF package
Genetics Yeast cdf Genetics Yeast cdf
updated 17.5 years ago by 68k • written 17.5 years ago by ▴ 50
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1.3k
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Limma-design matrix for technical replication
Microarray Genetics oligo Microarray Genetics oligo
17.5 years ago Gordon Smyth 53k
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1.1k
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limits/thresholds for arrayWeights in the limma package
Genetics limma Genetics limma
updated 17.5 years ago by ▴ 460 • written 17.5 years ago by ▴ 30
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1.6k
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(no subject)
Genetics Genetics
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 60
0
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1
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1.6k
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Limma-design matrix for technical replication
Genetics oligo Genetics oligo
updated 17.5 years ago by ★ 2.0k • written 17.5 years ago by ▴ 10
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1.8k
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Bioconductor Digest, Vol 66, Issue 2 Message 7 (apologies; long and veering off topic)
Genetics Annotation Genetics Annotation
updated 17.5 years ago by ▴ 910 • written 17.5 years ago by ▴ 90
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1.1k
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help for pathways
Genetics Genetics
updated 17.5 years ago by ★ 1.1k • written 17.5 years ago by ▴ 360
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1
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1.1k
views
Visualization of multiple alignments in bioconductor
Genetics Visualization Genetics Visualization
updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 10
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1
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1.3k
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GEOquery error importing GEO data with 'null' values
Genetics GEOquery Genetics GEOquery
updated 17.6 years ago by 21k • written 17.6 years ago by ▴ 10
337 results • Page 4 of 7
Recent ...
Replies
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Federico Marini ▴ 180
Jumping in on this - all this started because we want to "do it right", i.e. avoiding the post-hoc filtering on the logFC (which is still w…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
it looks above like you have a gene with two non-zero count samples. Also, yes you can use a stricter filter. You cannot estimate the LFC …
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Ahmed Salah • 0
Thank you very much for your answer. Actually, this is after pre-filtering ```r keep <- rowSums(counts(dds) >= 10) >= 3 dds <- dds[keep, …
Votes
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
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Popular Question to Hervé Pagès 16k
Scholar to Gordon Smyth 53k
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