Showing : Genetics • reset
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Fwd: Question about normalizing one color Agilent array using loess
Microarray Genetics Normalization limma marray Microarray Genetics Normalization limma
updated 17.7 years ago by ★ 13k • written 17.7 years ago by ▴ 30
0
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0
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889
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MAANOVA comparison matrix question
Genetics Genetics
17.7 years ago Cecilia McGregor ▴ 110
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0
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871
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Question about Error in next.fix:(next.fix + ncols - 1) : NA/NaN argument
Genetics Genetics
17.7 years ago Marcelo Laia ▴ 450
0
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1
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1.7k
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MAANOVA - Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent
Genetics Genetics
updated 17.8 years ago by ▴ 450 • written 17.8 years ago by ▴ 110
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1
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1.7k
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 17.8 years ago by ★ 1.6k • written 17.8 years ago by 25k
0
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2
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1.1k
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How can I see .C source code in affy package?
Genetics affy Genetics affy
updated 17.8 years ago by ★ 6.5k • written 17.8 years ago by ▴ 10
0
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1
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1.2k
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MAANOVA - how to collapse replicate spots
Genetics maanova Genetics maanova
updated 17.8 years ago by ▴ 450 • written 17.8 years ago by ▴ 110
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0
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797
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info su illumina
Genetics Annotation GO lumi Genetics Annotation GO lumi
17.8 years ago Pan Du ★ 1.2k
0
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0
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1.3k
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Postdoctoral Research @ Cold Spring Harbor Laboratory
Sequencing Genetics Cancer Sequencing Genetics Cancer
17.9 years ago Matthew Vaughn ▴ 30
0
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0
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1.1k
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MolPAGE Training Workshop on Causal Inference - 19-21 May 2008
Genetics Regression Genetics Regression
18.0 years ago Brian D M Tom ▴ 50
0
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0
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1.5k
views
Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
18.0 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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777
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Survey for genetics labs: how do you store & manage your data?
Sequencing Genetics PROcess Sequencing Genetics PROcess
18.0 years ago Matthew Keller ▴ 100
0
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0
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1.9k
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BIRD 2008 Conference Call for papers
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.1 years ago Prof. Roland Wagner ▴ 100
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0
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1.8k
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BIRD 2008
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.1 years ago Prof. Roland Wagner ▴ 100
0
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0
replies
1.9k
views
BIRD 2008 Conference
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.1 years ago Prof. Roland Wagner ▴ 100
0
votes
1
reply
742
views
linear model design
Genetics Genetics
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 10
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0
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1.7k
views
Bioinformatics positions
Microarray Genetics Proteomics Epigenetics Microarray Genetics Proteomics Epigenetics
18.2 years ago French, Jef NIH/NIEHS ▴ 30
0
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1
reply
3.2k
views
BIRD 2008
Genetics Pathways Cancer PROcess microRNA a4 Genetics Pathways Cancer PROcess microRNA
18.3 years ago • updated 18.2 years ago Prof. Roland Wagner ▴ 100
0
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0
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1.6k
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Postdoc position in statistical genetics/genomics, UCSF Epidemiology & Biostatistics
Genetics Genetics
18.3 years ago Ru-Fang Yeh ▴ 20
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0
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1.1k
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Announcement: Software developer training for Galaxy, Tuesday, October 23 4:00pm - 6:00pm, San Diego (just before the ASHG meeting)
Genetics Annotation Genetics Annotation
18.3 years ago Ross Lazarus ▴ 90
0
votes
1
reply
741
views
affylmGUI: options for 'Export HTML Report'?
Genetics Genetics
updated 18.4 years ago by ▴ 450 • written 18.4 years ago by ▴ 10
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0
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1.2k
views
Input for KS test
Genetics GO GOstats Category topGO Genetics GO GOstats Category topGO
18.5 years ago Ken Termiso ▴ 250
0
votes
0
replies
857
views
ADVERTISEMENT: statistical programmer position available, Boston
Genetics Genetics
18.7 years ago Ross Lazarus ▴ 90
0
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1
reply
1.6k
views
tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 30
0
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0
replies
1.2k
views
tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
18.7 years ago grischa tödt ▴ 30
0
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0
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1.2k
views
Limma - using both array and spot weights in lmFit
Genetics limma weaver Genetics limma weaver
18.7 years ago Gordon Smyth 53k
0
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0
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1.4k
views
BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
18.8 years ago Seth Falcon ★ 7.4k
0
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0
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869
views
Fitting mixture of beta-distributions
Microarray Genetics Microarray Genetics
18.8 years ago Tapan Mehta ▴ 270
0
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3
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1.8k
views
Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 18.8 years ago by ▴ 870 • written 18.8 years ago by 68k
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0
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1.4k
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affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
18.9 years ago Dick Beyer ★ 1.4k
0
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0
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1.5k
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Exclude probes that show sd above 0.1 between replicate values
Genetics probe Genetics probe
18.9 years ago João Fadista ▴ 500
0
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0
replies
863
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Limma - error when using duplicateCorrelation - Windows ver. Linux
Genetics probe limma Genetics probe limma
19.0 years ago Gordon Smyth 53k
0
votes
0
replies
764
views
Limma - error when using duplicateCorrelation - Windows ver. Linux
Genetics limma Genetics limma
19.0 years ago Jakob Hedegaard ▴ 170
0
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0
replies
859
views
post-doctoral fellowship in computational methods for systems genetics
Genetics graph Genetics graph
19.1 years ago Xinxia Peng ▴ 120
0
votes
7
replies
2.1k
views
Plate or print-order effects - limma
Genetics limma Genetics limma
updated 19.1 years ago by ▴ 500 • written 19.1 years ago by 53k
0
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0
replies
1.3k
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EST´s mapped to a known structural variation region
Microarray Genetics Microarray Genetics
19.1 years ago João Fadista ▴ 500
0
votes
1
reply
1.5k
views
Time course experiment with limma
Genetics limma Genetics limma
updated 19.2 years ago by ★ 6.0k • written 19.2 years ago by ▴ 110
0
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0
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2.3k
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Postdoctoral position for 'Statistical Methods in Bioinformatics'
Genetics HIV Genetics HIV
19.2 years ago Adrian Alexa ▴ 400
0
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1
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1.7k
views
[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 19.2 years ago by ▴ 900 • written 19.2 years ago by 25k
0
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1
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1.1k
views
limma - looking for training in limma
Genetics limma Genetics limma
updated 19.2 years ago by ★ 3.4k • written 19.2 years ago by ▴ 110
0
votes
0
replies
806
views
Limma - plotMA3by2 & imageplot3by2 - as -pdf?
Genetics limma Genetics limma
19.3 years ago Gordon Smyth 53k
0
votes
0
replies
689
views
FW: create probe file from CDF?
Genetics Cancer cdf probe gcrma Genetics Cancer cdf probe gcrma
19.3 years ago Lo, Ken ▴ 50
0
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0
replies
784
views
Limma - error when using duplicateCorrelation
Genetics limma Genetics limma
19.3 years ago Gordon Smyth 53k
0
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2
replies
1.0k
views
Custom CDFs from U mich for GeneChip Analysis
Genetics Cancer Genetics Cancer
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 50
0
votes
0
replies
850
views
Checking qc
Genetics simpleaffy Genetics simpleaffy
19.3 years ago alex lam RI ▴ 310
0
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2
replies
1.1k
views
Normalization quality
Genetics Normalization affy Genetics Normalization affy
updated 19.3 years ago by 21k • written 19.3 years ago by ▴ 310
0
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1
reply
1.6k
views
R: Degradation plots - Affy package
Transcription qPCR Genetics probe affy Transcription qPCR Genetics probe affy
updated 19.4 years ago by ▴ 360 • written 19.4 years ago by ▴ 10
0
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0
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1.0k
views
rflowcyt Programming Jamboree
Genetics Cancer rflowcyt Genetics Cancer rflowcyt
19.5 years ago Ryan Brinkman ▴ 10
0
votes
0
replies
740
views
Reference for Volcano plot
Genetics Genetics
19.6 years ago Gordon Smyth 53k
0
votes
3
replies
1.4k
views
Bioconductor Digest, Vol 41, Issue 4
Genetics Genetics
updated 19.6 years ago by ▴ 360 • written 19.6 years ago by 53k
337 results • Page 5 of 7
Recent ...
Replies
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Federico Marini ▴ 180
Jumping in on this - all this started because we want to "do it right", i.e. avoiding the post-hoc filtering on the logFC (which is still w…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
it looks above like you have a gene with two non-zero count samples. Also, yes you can use a stricter filter. You cannot estimate the LFC …
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Ahmed Salah • 0
Thank you very much for your answer. Actually, this is after pre-filtering ```r keep <- rowSums(counts(dds) >= 10) >= 3 dds <- dds[keep, …
Votes
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
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