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> but there is no way to capture this type of printing when you're fully aware of what is happening and don't want to see the messages (e.g…
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Normalization or filtering are never done for subsets of samples in any limma or edgeR analysis. These things must always be done globally.
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The simpler way to do the first four comparisons is to make a new column in colData that is temp_pollution, and specify that column alone a…
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You are. The reason I pointed you to `forgeBSgenomeDataPkgFromTwobitFile` is because it's much simpler, doesn't require a seed file, and is…
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