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0
votes
2
replies
3.4k
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pathview -- ID Problem?
graph
pathview
graph
pathview
updated 12.0 years ago by
fabian
▴ 40 • written 12.0 years ago by
Luo Weijun
★ 1.6k
0
votes
6
replies
4.4k
views
Directed MST (Edmond's Algorithm)
GO
graph
RBGL
GO
graph
RBGL
updated 12.0 years ago by
Steve Lianoglou
★ 13k • written 12.0 years ago by
Forst, Christian
▴ 90
0
votes
1
reply
2.5k
views
deseq2 plotMA
GO
graph
DESeq2
GO
graph
DESeq2
updated 12.0 years ago by
Michael Love
43k • written 12.0 years ago by
Jose M Garcia Manteiga
▴ 310
0
votes
7
replies
2.8k
views
Using KeggGraph's KEGGpathway2reactionGraph and mergeKEGGgraphs functions
graph
KEGGgraph
graph
KEGGgraph
12.1 years ago
Zhang, Jitao David
▴ 120
0
votes
1
reply
2.4k
views
Pathview - Problem with PNG output
Pathways
graph
pathview
Pathways
graph
pathview
updated 12.1 years ago by
Luo Weijun
★ 1.6k • written 12.1 years ago by
Christian De Santis
▴ 150
0
votes
0
replies
933
views
pathview question
graph
graph
12.2 years ago
Luo Weijun
★ 1.6k
0
votes
5
replies
2.2k
views
rsbml package installation error
graph
rsbml
graph
rsbml
updated 12.2 years ago by
Stefan Gries
▴ 50 • written 12.2 years ago by
Michael Lawrence
★ 11k
0
votes
0
replies
1.9k
views
Change enzyme code (EC) into gene symbol
Pathways
graph
pathview
Pathways
graph
pathview
12.2 years ago
Luo Weijun
★ 1.6k
0
votes
4
replies
4.0k
views
Pathview for global and overview maps Re: using pathview about hsa01100
Pathways
graph
PROcess
SIM
gage
pathview
Pathways
graph
PROcess
SIM
gage
pathview
updated 12.2 years ago by
Ed
▴ 230 • written 12.2 years ago by
Luo Weijun
★ 1.6k
0
votes
0
replies
3.1k
views
Pathview with non-KEGG organisms?
Microbiome
Pathways
GO
Visualization
Organism
graph
gage
pathview
Microbiome
Pathways
GO
12.3 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.3k
views
Error converting SBML to graph Object using R SBML
Network
graph
convert
rsbml
Network
graph
convert
rsbml
12.3 years ago
Michael Lawrence
★ 11k
0
votes
4
replies
1.5k
views
Error converting SBML to graph Object using R SBML
graph
convert
graph
convert
updated 12.3 years ago by
Dan Tenenbaum
★ 8.2k • written 12.3 years ago by
Robin Philip
▴ 20
0
votes
0
replies
3.5k
views
Pathview+GAGE workflow on RNA-seq data pathway analysis and visualization (was: Pathview published in Bioinformatics)
Annotation
Pathways
Visualization
graph
PROcess
gage
pathview
Annotation
Pathways
graph
12.3 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.6k
views
Pathview published in Bioinformatics
Visualization
graph
pathview
Visualization
graph
pathview
12.3 years ago
km
▴ 100
0
votes
1
reply
1.9k
views
Rgraphviz multiline edge label
graph
Rgraphviz
graph
Rgraphviz
updated 12.3 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.3 years ago by
Guest User
★ 13k
0
votes
0
replies
2.3k
views
info on pathview
graph
PROcess
pathview
graph
PROcess
pathview
12.4 years ago
Luo Weijun
★ 1.6k
0
votes
3
replies
2.1k
views
rsbml package installation error
graph
rsbml
graph
rsbml
updated 12.4 years ago by
Michael Lawrence
★ 11k • written 12.4 years ago by
Stefan Gries
▴ 50
0
votes
0
replies
1.4k
views
pathview
Pathways
graph
pathview
Pathways
graph
pathview
12.4 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.2k
views
DEXSeq: PlotMA issues
graph
DESeq
DEXSeq
graph
DESeq
DEXSeq
12.4 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.2k
views
Doubt RCytoscape
graph
graph
updated 12.5 years ago by
Paul Shannon
▴ 750 • written 12.5 years ago by
Ricardo Silva
▴ 110
1
vote
1
reply
2.2k
views
topGO Fisher test error
GO
graph
GO
graph
updated 12.6 years ago by
Adrian Alexa
▴ 400 • written 12.6 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
two color arrays, LIMMA and GOstats analysis
Clustering
graph
Clustering
graph
12.6 years ago
Andreas Heider
▴ 340
0
votes
1
reply
1.4k
views
5000 nodes RCytoscape
Network
graph
Network
graph
12.6 years ago
Paul Shannon
▴ 750
0
votes
3
replies
1.3k
views
bug in graph::edgeData()
graph
graph
updated 12.7 years ago by
Paul Shannon
▴ 750 • written 12.7 years ago by
Robert Castelo
★ 3.4k
0
votes
1
reply
1.2k
views
graph::subGraph() problem with node attributes
graph
graph
updated 12.8 years ago by
Valerie Obenchain
★ 6.8k • written 12.8 years ago by
Robert Castelo
★ 3.4k
0
votes
2
replies
2.0k
views
GSEABase error parsing msigdb_v3.1.xml
GO
Infrastructure
hgu95av2
Biobase
annotate
graph
Category
AnnotationDbi
BiocGenerics
GO
updated 12.8 years ago by
Martin Morgan
25k • written 12.8 years ago by
Lina Hultin-Rosenberg
▴ 80
1
vote
0
replies
1.2k
views
GO graphs made with topGO are unreadable
GO
graph
topGO
GO
graph
topGO
12.8 years ago
Guest User
★ 13k
0
votes
2
replies
4.5k
views
Offline Installation of Packages and Dependencies
graph
graph
updated 12.9 years ago by
Kasper Daniel Hansen
★ 6.5k • written 12.9 years ago by
Nathan Bihlmeyer
▴ 20
0
votes
2
replies
2.0k
views
nodeRenderInfo fill property not working with graph/Rgraphviz
graph
Rgraphviz
graph
Rgraphviz
updated 13.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 13.0 years ago by
Cristobal Fresno Rodríguez
▴ 370
0
votes
4
replies
3.0k
views
goseq analysis
GO
graph
edgeR
goseq
GO
graph
edgeR
goseq
updated 13.0 years ago by
Alicia Oshlack
▴ 100 • written 13.0 years ago by
Dave Tang
▴ 210
0
votes
4
replies
2.4k
views
KEGGgraph
Pathways
Organism
graph
PROcess
KEGGgraph
Pathways
Organism
graph
PROcess
KEGGgraph
13.0 years ago
Ricardo Silva
▴ 110
0
votes
1
reply
1.4k
views
EdgeR GOF non-linear
Sequencing
graph
edgeR
Sequencing
graph
edgeR
updated 13.1 years ago by
Gordon Smyth
53k • written 13.1 years ago by
Thomas Frederick Willems
▴ 20
0
votes
0
replies
828
views
limma and legacy data
Microarray
GO
graph
limma
Microarray
GO
graph
limma
13.1 years ago
Simon Melov
▴ 340
0
votes
1
reply
1.0k
views
Analysis of chIP-chip
graph
graph
updated 13.1 years ago by
Joern Toedling
▴ 50 • written 13.1 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
Rgraphviz plot with edge weights
graph
graph
13.1 years ago
Sam Steingold
▴ 30
0
votes
1
reply
872
views
Question on survival
graph
graph
updated 13.1 years ago by
James W. MacDonald
68k • written 13.1 years ago by
lau pel
▴ 30
1
vote
2
replies
1.4k
views
DEXSeq: Difference in splicing
graph
DEXSeq
graph
DEXSeq
updated 13.1 years ago by
Alejandro Reyes
★ 1.9k • written 13.1 years ago by
Guest User
★ 13k
0
votes
7
replies
2.0k
views
GeneAnswer package Query
Network
graph
Network
graph
updated 13.2 years ago by
Gilbert Feng
▴ 300 • written 13.2 years ago by
Reema Singh
▴ 570
0
votes
0
replies
991
views
Can I adjust family relationship in Limma?
Microarray
graph
limma
Microarray
graph
limma
13.2 years ago
Gordon Smyth
53k
0
votes
0
replies
1.0k
views
BioPAX parsing
Pathways
Visualization
Network
graph
Pathways
Visualization
Network
graph
13.3 years ago
Oliver Ruebenacker
▴ 110
0
votes
0
replies
1.7k
views
Overlapping ROC plots
Classification
ROC
graph
Classification
ROC
graph
13.4 years ago
Yadav Sapkota
▴ 130
0
votes
1
reply
2.2k
views
estimateDispersions in DESeq
Genetics
graph
DESeq
Genetics
graph
DESeq
updated 13.4 years ago by
Wolfgang Huber
★ 13k • written 13.4 years ago by
Flavia Nunes
▴ 10
0
votes
0
replies
1.3k
views
changes to RBGL
graph
RBGL
graph
RBGL
13.4 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
8
replies
2.7k
views
BioPAX parsing
graph
graph
updated 13.4 years ago by
Oliver Ruebenacker
▴ 110 • written 13.4 years ago by
Martin Preusse
▴ 100
0
votes
1
reply
3.8k
views
voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization
graph
limma
convert
edgeR
DESeq
Rsubread
Normalization
graph
limma
convert
updated 2.9 years ago by
Gordon Smyth
53k • written 13.4 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
4
replies
4.0k
views
voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization
GO
graph
Rsubread
Normalization
GO
graph
Rsubread
updated 13.5 years ago by
Gordon Smyth
53k • written 13.5 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.0k
views
normalize GFP expression by cell size and graph with densityplot
graph
graph
13.5 years ago
Chandra Jack
▴ 90
0
votes
0
replies
850
views
edge-less pathways in graphite
Pathways
graph
Pathways
graph
13.5 years ago
Paul Shannon
▴ 750
0
votes
1
reply
1.9k
views
deprecated head file for RBGL and compilation failure
graph
RBGL
PROcess
graph
RBGL
PROcess
updated 13.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.6 years ago by
Guest User
★ 13k
0
votes
0
replies
1.3k
views
Rgraphviz and node label placement
GO
graph
GO
graph
13.6 years ago
Paul Murrell
▴ 60
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4.2k
This should now be resolved
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