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Views
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Showing :
Graph
•
reset
0
votes
4
replies
1.7k
views
problem getting setNodeColorRule from RCytoscape to work
graph
graph
13.6 years ago
Tony
▴ 30
0
votes
0
replies
1.2k
views
Rgraphviz and node label placement
GO
graph
GO
graph
13.6 years ago
Iain Gallagher
▴ 930
0
votes
2
replies
1.9k
views
RCytoscape not recognizing initiated edge attributes.
graph
RCytoscape
graph
RCytoscape
13.7 years ago
Burak Kutlu
▴ 140
0
votes
1
reply
1.0k
views
a way to select and filter edge attributes in RCytoscape
graph
graph
updated 13.7 years ago by
Paul Shannon
▴ 750 • written 13.7 years ago by
Burak Kutlu
▴ 140
0
votes
2
replies
2.8k
views
can't get degree function to work in graph package
graph
graph
updated 13.7 years ago by
Dan Tenenbaum
★ 8.2k • written 13.7 years ago by
Burak Kutlu
▴ 140
0
votes
1
reply
747
views
NucleR: processReads/solveUserSEW0 - Error
graph
graph
updated 13.9 years ago by
Oscar Flores
▴ 50 • written 13.9 years ago by
Stefanie Ververs
▴ 70
0
votes
2
replies
1.6k
views
Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Bayesian
graph
Bayesian
graph
updated 14.0 years ago by
Sean Davis
21k • written 14.0 years ago by
Royce Francis
▴ 20
0
votes
0
replies
1.4k
views
topGO graph visualization functions crashing under R 2.13.2 with Graphviz 2.20.3.1
GO
Visualization
graph
Rgraphviz
topGO
GO
Visualization
graph
Rgraphviz
topGO
14.0 years ago
Joseph Skaf
▴ 20
0
votes
2
replies
1.7k
views
bug in rendering reciprocal edges?
Network
graph
Rgraphviz
Network
graph
Rgraphviz
updated 14.2 years ago by
Nishant Gopalakrishnan
▴ 340 • written 14.2 years ago by
Wouter van Atteveldt
▴ 20
0
votes
0
replies
1.1k
views
Rgraphviz and custom nodes
graph
Rgraphviz
graph
Rgraphviz
14.2 years ago
Karl Weber
▴ 10
0
votes
0
replies
958
views
LEA graph correction in topGO
GO
graph
topGO
GO
graph
topGO
14.3 years ago
tom carroll
▴ 10
0
votes
2
replies
2.0k
views
plotting probes along a chromosome
graph
GenomeGraphs
ASSIGN
graph
GenomeGraphs
ASSIGN
updated 14.3 years ago by
Oosting, J. PATH
▴ 550 • written 14.3 years ago by
Pete Shepard
▴ 240
0
votes
2
replies
1.7k
views
KEGGgraph
graph
KEGGgraph
graph
KEGGgraph
updated 14.3 years ago by
Jitao David Zhang
▴ 340 • written 14.3 years ago by
Jing Huang
▴ 380
0
votes
1
reply
1.6k
views
bug info
Microarray
Normalization
geneplotter
graph
limma
Microarray
Normalization
geneplotter
updated 14.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.4 years ago by
Mathieu Olivier
▴ 10
0
votes
0
replies
830
views
Rgraphviz: Reproduce node layout from fdp
graph
graph
14.4 years ago
Gregory C Imholte
▴ 10
0
votes
1
reply
1.5k
views
working with large dataframes in R
graph
graph
updated 14.5 years ago by
Robert Baer
▴ 70 • written 14.5 years ago by
Elena Sorokin
▴ 160
0
votes
2
replies
886
views
Creating a figure showing Affy probe-set alignments along a small segment of chromosome
probe
graph
probe
graph
updated 14.5 years ago by
Sean Davis
21k • written 14.5 years ago by
Richard Student
▴ 30
0
votes
1
reply
705
views
Creating a graph showing Affy probe-set alignments along a small segment of chromosome
probe
graph
probe
graph
updated 14.5 years ago by
Steve Lianoglou
★ 13k • written 14.5 years ago by
Richard Student
▴ 30
0
votes
0
replies
1.0k
views
How to get defenitive Amp/del/nochange using DNAcopy package?
graph
DNAcopy
graph
DNAcopy
14.5 years ago
Chiho Kwon
▴ 10
0
votes
0
replies
1.2k
views
[R] issue with graph package in using RBGL -‘'graph' is not a valid installed package’"
graph
graph
14.5 years ago
joe j
▴ 70
0
votes
1
reply
1.2k
views
BrainArray custom CDF repository missing in biocReposList()
Microarray
cdf
probe
graph
Microarray
cdf
probe
graph
updated 14.5 years ago by
James W. MacDonald
68k • written 14.5 years ago by
Martha Behnke
▴ 100
0
votes
1
reply
2.2k
views
Having trouble with new brainarray CDF
Microarray
Annotation
AnnotationData
AffymetrixChip
hgu133a2
cdf
probe
graph
AnnotationDbi
updated 14.5 years ago by
Marc Carlson
★ 7.2k • written 14.5 years ago by
Martha Behnke
▴ 100
0
votes
0
replies
1.2k
views
Rgraphviz weight attributes
graph
Rgraphviz
graph
Rgraphviz
14.6 years ago
Robert M. Flight
▴ 280
0
votes
0
replies
2.4k
views
Visualising the GO structure (RNA-seq) using topGO, and goseq
Microarray
GO
Visualization
graph
topGO
goseq
Microarray
GO
Visualization
graph
topGO
14.6 years ago
Paolo Sonego
▴ 140
0
votes
0
replies
1.0k
views
graph classes: how to combine multiple graphs into a single graph
graph
graph
14.7 years ago
Paul Shannon
★ 1.1k
0
votes
1
reply
932
views
Drawing segments from one plot to another
graph
graph
updated 14.7 years ago by
Steve Lianoglou
★ 13k • written 14.7 years ago by
Fong Chun Chan
▴ 130
0
votes
4
replies
4.0k
views
Overlapping boxplots with transparency
graph
graph
updated 14.7 years ago by
Heidi Dvinge
★ 2.0k • written 14.7 years ago by
Fong Chun Chan
▴ 130
0
votes
2
replies
3.1k
views
Plotting multiple graphs with a heatmap
graph
graph
updated 14.7 years ago by
Steve Lianoglou
★ 13k • written 14.7 years ago by
Fong Chun Chan
▴ 130
0
votes
4
replies
1.8k
views
[R] RCytoscape setPosition error
Network
Cancer
graph
Network
Cancer
graph
updated 14.7 years ago by
Fahim Md
▴ 250 • written 14.7 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.5k
views
graph classes: how to combine multiple graphs into a single graph
graph
graph
14.7 years ago
Daniela Beißer
▴ 20
0
votes
2
replies
2.2k
views
graph classes: how to combine multiple graphs into a single graph
graph
graph
updated 14.7 years ago by
Nishant Gopalakrishnan
▴ 340 • written 14.7 years ago by
Paul Shannon
★ 1.1k
0
votes
3
replies
2.2k
views
flowCore workflows and logical operations on gate views
graph
flowCore
flowViz
graph
flowCore
flowViz
updated 14.8 years ago by
Chao-Jen Wong
▴ 580 • written 14.8 years ago by
Alessandro Di Cara
▴ 20
0
votes
3
replies
1.7k
views
NCI pathways to graphNEL
Pathways
graph
Rredland
GeneAnswers
Pathways
graph
Rredland
GeneAnswers
14.8 years ago
laurent jacob
▴ 100
0
votes
1
reply
1.9k
views
extracting topGO gene ids from result object
Annotation
GO
graph
GOstats
topGO
Annotation
GO
graph
GOstats
topGO
updated 14.8 years ago by
Paul Rigor
▴ 20 • written 14.8 years ago by
Adrian Alexa
▴ 400
0
votes
2
replies
1.2k
views
rtracklayer issues with other packages?
GO
Cancer
BSgenome
graph
Biostrings
GOstats
BSgenome
rtracklayer
GO
Cancer
BSgenome
updated 14.9 years ago by
Michael Lawrence
★ 11k • written 14.9 years ago by
mattia pelizzola
▴ 200
0
votes
2
replies
1.4k
views
graph::join discards node and edge attributes
graph
PROcess
graph
PROcess
updated 14.9 years ago by
Paul Shannon
★ 1.1k • written 14.9 years ago by
Nishant Gopalakrishnan
▴ 340
0
votes
6
replies
2.0k
views
KEGGgraph help
graph
graph
updated 14.9 years ago by
Jitao David Zhang
▴ 340 • written 14.9 years ago by
Yan Jiao
▴ 140
0
votes
0
replies
888
views
graph::join discards node and edge attributes
graph
graph
14.9 years ago
Paul Shannon
★ 1.1k
0
votes
2
replies
1.7k
views
RCytoscape performance
graph
RCytoscape
graph
RCytoscape
updated 15.0 years ago by
Paul Shannon
★ 1.1k • written 15.0 years ago by
Chad Burrus
▴ 20
0
votes
0
replies
1.3k
views
Downloading metabolic pathway data from KEGG
Network
graph
Network
graph
15.1 years ago
Tim Clough
▴ 10
0
votes
0
replies
2.0k
views
Percentage of Variance to be included at 3D graph, of Principal Component Analysis (PCA)- made4 package
Cancer
graph
made4
Cancer
graph
made4
15.1 years ago
Aedin Culhane
▴ 510
0
votes
3
replies
2.8k
views
Percentage of Variance to be included at 3D graph of Principal Component Analysis (PCA)- made4 package
GO
graph
GO
graph
15.1 years ago
John Antonydas Gaspar
▴ 130
4
votes
1
reply
2.9k
views
Gene Ontology: filtering out most informative terms from a list of GO terms
GO
graph
GO
graph
updated 15.1 years ago by
Marc Carlson
★ 7.2k • written 15.1 years ago by
Aaron Weimann
▴ 30
3
votes
3
replies
3.1k
views
Drawing multiple sequence logos with seqLogo?
graph
seqLogo
graph
seqLogo
15.2 years ago
Nenad Bartonicek
▴ 80
0
votes
1
reply
1.2k
views
Loading ontologies from OBO foundry?
graph
ontoTools
graph
ontoTools
updated 15.3 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.3 years ago by
stubben
▴ 80
0
votes
1
reply
1.1k
views
Rgraphviz in windows 7 - problem with GUI?
GUI
graph
Rgraphviz
GUI
graph
Rgraphviz
updated 15.3 years ago by
Hervé Pagès
16k • written 15.3 years ago by
Neta Zuckerman
▴ 10
0
votes
0
replies
1.1k
views
defining node positions in Rgraphviz
graph
Rgraphviz
graph
Rgraphviz
15.3 years ago
Robert M. Flight
▴ 280
0
votes
2
replies
1.8k
views
proposed: a bridge between R and Cytoscape
Visualization
Network
graph
Visualization
Network
graph
updated 15.4 years ago by
Steve Lianoglou
★ 13k • written 15.4 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
1.1k
views
Rgraphviz crashes for R 2.11.1 on Windows Vista
graph
Rgraphviz
graph
Rgraphviz
updated 15.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 15.4 years ago by
Tae-Hoon Chung
▴ 70
0
votes
3
replies
4.3k
views
RGraphViz: length edges
graph
Rgraphviz
graph
Rgraphviz
updated 15.4 years ago by
prsmra01@uniroma2.it
▴ 50 • written 15.5 years ago by
Guido Hooiveld
★ 4.1k
360 results • Page
3 of 8
Recent ...
Replies
Comment: Failure to download resources (MeSHDb) from AnnotationHub
by
Steve Lianoglou
★ 13k
That fixed it, thanks Lori!
Comment: Suppress warning in RHDF5 write
by
nicolas.lhuillier
• 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write
by
James W. MacDonald
68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub
by
shepherl
4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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