Showing : Graph • reset
0
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4
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1.7k
views
problem getting setNodeColorRule from RCytoscape to work
graph graph
13.6 years ago Tony ▴ 30
0
votes
0
replies
1.2k
views
Rgraphviz and node label placement
GO graph GO graph
13.6 years ago Iain Gallagher ▴ 930
0
votes
2
replies
1.9k
views
RCytoscape not recognizing initiated edge attributes.
graph RCytoscape graph RCytoscape
13.7 years ago Burak Kutlu ▴ 140
0
votes
1
reply
1.0k
views
a way to select and filter edge attributes in RCytoscape
graph graph
updated 13.7 years ago by ▴ 750 • written 13.7 years ago by ▴ 140
0
votes
2
replies
2.8k
views
can't get degree function to work in graph package
graph graph
updated 13.7 years ago by ★ 8.2k • written 13.7 years ago by ▴ 140
0
votes
1
reply
747
views
NucleR: processReads/solveUserSEW0 - Error
graph graph
updated 13.9 years ago by ▴ 50 • written 13.9 years ago by ▴ 70
0
votes
2
replies
1.6k
views
Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Bayesian graph Bayesian graph
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 20
0
votes
0
replies
1.4k
views
topGO graph visualization functions crashing under R 2.13.2 with Graphviz 2.20.3.1
GO Visualization graph Rgraphviz topGO GO Visualization graph Rgraphviz topGO
14.0 years ago Joseph Skaf ▴ 20
0
votes
2
replies
1.7k
views
bug in rendering reciprocal edges?
Network graph Rgraphviz Network graph Rgraphviz
updated 14.2 years ago by ▴ 340 • written 14.2 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Rgraphviz and custom nodes
graph Rgraphviz graph Rgraphviz
14.2 years ago Karl Weber ▴ 10
0
votes
0
replies
958
views
LEA graph correction in topGO
GO graph topGO GO graph topGO
14.3 years ago tom carroll ▴ 10
0
votes
2
replies
2.0k
views
plotting probes along a chromosome
graph GenomeGraphs ASSIGN graph GenomeGraphs ASSIGN
updated 14.3 years ago by ▴ 550 • written 14.3 years ago by ▴ 240
0
votes
2
replies
1.7k
views
KEGGgraph
graph KEGGgraph graph KEGGgraph
updated 14.3 years ago by ▴ 340 • written 14.3 years ago by ▴ 380
0
votes
1
reply
1.6k
views
bug info
Microarray Normalization geneplotter graph limma Microarray Normalization geneplotter
updated 14.4 years ago by 6.7k • written 14.4 years ago by ▴ 10
0
votes
0
replies
830
views
Rgraphviz: Reproduce node layout from fdp
graph graph
14.4 years ago Gregory C Imholte ▴ 10
0
votes
1
reply
1.5k
views
working with large dataframes in R
graph graph
updated 14.5 years ago by ▴ 70 • written 14.5 years ago by ▴ 160
0
votes
2
replies
886
views
Creating a figure showing Affy probe-set alignments along a small segment of chromosome
probe graph probe graph
updated 14.5 years ago by 21k • written 14.5 years ago by ▴ 30
0
votes
1
reply
705
views
Creating a graph showing Affy probe-set alignments along a small segment of chromosome
probe graph probe graph
updated 14.5 years ago by ★ 13k • written 14.5 years ago by ▴ 30
0
votes
0
replies
1.0k
views
How to get defenitive Amp/del/nochange using DNAcopy package?
graph DNAcopy graph DNAcopy
14.5 years ago Chiho Kwon ▴ 10
0
votes
0
replies
1.2k
views
[R] issue with graph package in using RBGL -‘'graph' is not a valid installed package’"
graph graph
14.5 years ago joe j ▴ 70
0
votes
1
reply
1.2k
views
BrainArray custom CDF repository missing in biocReposList()
Microarray cdf probe graph Microarray cdf probe graph
updated 14.5 years ago by 68k • written 14.5 years ago by ▴ 100
0
votes
1
reply
2.2k
views
Having trouble with new brainarray CDF
Microarray Annotation AnnotationData AffymetrixChip hgu133a2 cdf probe graph AnnotationDbi
updated 14.5 years ago by ★ 7.2k • written 14.5 years ago by ▴ 100
0
votes
0
replies
1.2k
views
Rgraphviz weight attributes
graph Rgraphviz graph Rgraphviz
14.6 years ago Robert M. Flight ▴ 280
0
votes
0
replies
2.4k
views
Visualising the GO structure (RNA-seq) using topGO, and goseq
Microarray GO Visualization graph topGO goseq Microarray GO Visualization graph topGO
14.6 years ago Paolo Sonego ▴ 140
0
votes
0
replies
1.0k
views
graph classes: how to combine multiple graphs into a single graph
graph graph
14.7 years ago Paul Shannon ★ 1.1k
0
votes
1
reply
932
views
Drawing segments from one plot to another
graph graph
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 130
0
votes
4
replies
4.0k
views
Overlapping boxplots with transparency
graph graph
updated 14.7 years ago by ★ 2.0k • written 14.7 years ago by ▴ 130
0
votes
2
replies
3.1k
views
Plotting multiple graphs with a heatmap
graph graph
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 130
0
votes
4
replies
1.8k
views
[R] RCytoscape setPosition error
Network Cancer graph Network Cancer graph
updated 14.7 years ago by ▴ 250 • written 14.7 years ago by ★ 1.1k
0
votes
0
replies
1.5k
views
graph classes: how to combine multiple graphs into a single graph
graph graph
14.7 years ago Daniela Beißer ▴ 20
0
votes
2
replies
2.2k
views
graph classes: how to combine multiple graphs into a single graph
graph graph
updated 14.7 years ago by ▴ 340 • written 14.7 years ago by ★ 1.1k
0
votes
3
replies
2.2k
views
flowCore workflows and logical operations on gate views
graph flowCore flowViz graph flowCore flowViz
updated 14.8 years ago by ▴ 580 • written 14.8 years ago by ▴ 20
0
votes
3
replies
1.7k
views
NCI pathways to graphNEL
Pathways graph Rredland GeneAnswers Pathways graph Rredland GeneAnswers
14.8 years ago laurent jacob ▴ 100
0
votes
1
reply
1.9k
views
extracting topGO gene ids from result object
Annotation GO graph GOstats topGO Annotation GO graph GOstats topGO
updated 14.8 years ago by ▴ 20 • written 14.8 years ago by ▴ 400
0
votes
2
replies
1.2k
views
rtracklayer issues with other packages?
GO Cancer BSgenome graph Biostrings GOstats BSgenome rtracklayer GO Cancer BSgenome
updated 14.9 years ago by ★ 11k • written 14.9 years ago by ▴ 200
0
votes
2
replies
1.4k
views
graph::join discards node and edge attributes
graph PROcess graph PROcess
updated 14.9 years ago by ★ 1.1k • written 14.9 years ago by ▴ 340
0
votes
6
replies
2.0k
views
KEGGgraph help
graph graph
updated 14.9 years ago by ▴ 340 • written 14.9 years ago by ▴ 140
0
votes
0
replies
888
views
graph::join discards node and edge attributes
graph graph
14.9 years ago Paul Shannon ★ 1.1k
0
votes
2
replies
1.7k
views
RCytoscape performance
graph RCytoscape graph RCytoscape
updated 15.0 years ago by ★ 1.1k • written 15.0 years ago by ▴ 20
0
votes
0
replies
1.3k
views
Downloading metabolic pathway data from KEGG
Network graph Network graph
15.1 years ago Tim Clough ▴ 10
0
votes
0
replies
2.0k
views
Percentage of Variance to be included at 3D graph, of Principal Component Analysis (PCA)- made4 package
Cancer graph made4 Cancer graph made4
15.1 years ago Aedin Culhane ▴ 510
0
votes
3
replies
2.8k
views
Percentage of Variance to be included at 3D graph of Principal Component Analysis (PCA)- made4 package
GO graph GO graph
15.1 years ago John Antonydas Gaspar ▴ 130
4
votes
1
reply
2.9k
views
Gene Ontology: filtering out most informative terms from a list of GO terms
GO graph GO graph
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ▴ 30
3
votes
3
replies
3.1k
views
Drawing multiple sequence logos with seqLogo?
graph seqLogo graph seqLogo
15.2 years ago Nenad Bartonicek ▴ 80
0
votes
1
reply
1.2k
views
Loading ontologies from OBO foundry?
graph ontoTools graph ontoTools
updated 15.3 years ago by 6.7k • written 15.3 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Rgraphviz in windows 7 - problem with GUI?
GUI graph Rgraphviz GUI graph Rgraphviz
updated 15.3 years ago by 16k • written 15.3 years ago by ▴ 10
0
votes
0
replies
1.1k
views
defining node positions in Rgraphviz
graph Rgraphviz graph Rgraphviz
15.3 years ago Robert M. Flight ▴ 280
0
votes
2
replies
1.8k
views
proposed: a bridge between R and Cytoscape
Visualization Network graph Visualization Network graph
updated 15.4 years ago by ★ 13k • written 15.4 years ago by ★ 1.1k
0
votes
1
reply
1.1k
views
Rgraphviz crashes for R 2.11.1 on Windows Vista
graph Rgraphviz graph Rgraphviz
updated 15.4 years ago by ★ 6.5k • written 15.4 years ago by ▴ 70
0
votes
3
replies
4.3k
views
RGraphViz: length edges
graph Rgraphviz graph Rgraphviz
updated 15.4 years ago by ▴ 50 • written 15.5 years ago by ★ 4.1k
360 results • Page 3 of 8
Recent ...
Replies
Comment: Failure to download resources (MeSHDb) from AnnotationHub by Steve Lianoglou ★ 13k
That fixed it, thanks Lori!
Comment: Suppress warning in RHDF5 write by nicolas.lhuillier • 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write by James W. MacDonald 68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Awards • All
Scholar to shepherl 4.2k
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