Bioconductor KEGG

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 7 days ago by James W. MacDonald 65k • written 7 days ago by fernanda.backsouza ▴ 10

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360

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clusterProfiler GenomicDistributionsData KEGG

9 days ago • updated 6 days ago fernanda.backsouza ▴ 10

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194

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 9 days ago by Guido Hooiveld ★ 3.9k • written 11 days ago by fernanda.backsouza ▴ 10

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184

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Pathways clusterProfiler gseKEGG KEGG

18 days ago julia_mcdonough • 0

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248

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enrichKEGG KEGGgraph KEGG

updated 10 weeks ago by Guido Hooiveld ★ 3.9k • written 10 weeks ago by cinzia.spagnoli • 0

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351

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KEGGREST KEGG RNASeq

6 months ago mch • 0

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1.1k

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pathview kegg KEGG

updated 6 months ago by Benji Bromberg ▴ 20 • written 7 months ago by Mauricio Diego • 0

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1.1k

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KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db

updated 8 months ago by Guido Hooiveld ★ 3.9k • written 8 months ago by Milan ▴ 10

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348

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axolotl KEGG GOstats clusterProfiler

9 months ago georgii.vdovin • 0

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1.0k

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pathview KEGG Oryza_sativa

10 months ago Jiyoung Lee • 0

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559

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timecourse KEGG DESeq2

updated 11 months ago by Michael Love 41k • written 11 months ago by Fred • 0

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1.3k

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cluster clusterProfiler KEGG

12 months ago • updated 11 months ago ruba-mahmoud • 0

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1.2k

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KEGG limma

written 13 months ago by andrewsm • 0

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2.5k

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KEGG gometh

updated 11 months ago by Aung • 0 • written 13 months ago by pedro-marra ▴ 10

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1.9k

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KEGG clusterProfiler

updated 3 months ago by Guido Hooiveld ★ 3.9k • written 14 months ago by ruiqi.li ▴ 10

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1.8k

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clusterProfiler enrichment KEGG

updated 10 weeks ago by cinzia.spagnoli • 0 • written 23 months ago by AP • 0

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1.4k

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KEGG GAGE NaN R DESeq2

updated 11 months ago by Rob • 0 • written 5.5 years ago by owen.donohoe • 0

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1.5k

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kegg enrichkegg clusterprofiler

updated 5 months ago by EvaLan • 0 • written 5.8 years ago by bekah ▴ 40

18 results • Page 1 of 1

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Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

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SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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