Bioconductor Kegg

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 3 days ago by James W. MacDonald 65k • written 3 days ago by fernanda.backsouza ▴ 10

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289

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clusterProfiler GenomicDistributionsData KEGG

5 days ago • updated 2 days ago fernanda.backsouza ▴ 10

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166

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 4 days ago by Guido Hooiveld ★ 3.9k • written 7 days ago by fernanda.backsouza ▴ 10

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172

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Pathways clusterProfiler gseKEGG KEGG

14 days ago julia_mcdonough • 0

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237

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enrichKEGG KEGGgraph KEGG

updated 9 weeks ago by Guido Hooiveld ★ 3.9k • written 10 weeks ago by cinzia.spagnoli • 0

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344

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KEGGREST KEGG RNASeq

5 months ago mch • 0

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1.1k

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pathview kegg KEGG

updated 6 months ago by Benji Bromberg ▴ 20 • written 7 months ago by Mauricio Diego • 0

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1.1k

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KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db

updated 8 months ago by Guido Hooiveld ★ 3.9k • written 8 months ago by Milan ▴ 10

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345

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axolotl KEGG GOstats clusterProfiler

9 months ago georgii.vdovin • 0

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1.0k

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pathview KEGG Oryza_sativa

10 months ago Jiyoung Lee • 0

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556

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timecourse KEGG DESeq2

updated 10 months ago by Michael Love 41k • written 11 months ago by Fred • 0

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1.3k

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cluster clusterProfiler KEGG

12 months ago • updated 11 months ago ruba-mahmoud • 0

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1.2k

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KEGG limma

written 13 months ago by andrewsm • 0

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2.5k

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KEGG gometh

updated 11 months ago by Aung • 0 • written 13 months ago by pedro-marra ▴ 10

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1.9k

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KEGG clusterProfiler

updated 3 months ago by Guido Hooiveld ★ 3.9k • written 14 months ago by ruiqi.li ▴ 10

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1.8k

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clusterProfiler enrichment KEGG

updated 10 weeks ago by cinzia.spagnoli • 0 • written 22 months ago by AP • 0

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1.4k

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KEGG GAGE NaN R DESeq2

updated 11 months ago by Rob • 0 • written 5.5 years ago by owen.donohoe • 0

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1.5k

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kegg enrichkegg clusterprofiler

updated 4 months ago by EvaLan • 0 • written 5.7 years ago by bekah ▴ 40

18 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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