Biostar MACS2

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DESeq2 MACS2

10 weeks ago • updated 9 weeks ago vanbelj ▴ 20

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921

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ChIPSeq SICER2 DiffBind MACS2 offtopic

updated 20 months ago by James W. MacDonald 62k • written 20 months ago by Yuan Tian ▴ 250

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732

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DiffBind MACS2

updated 2.5 years ago by Rory Stark ★ 4.6k • written 2.5 years ago by ep15587 • 0

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1.0k

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DiffBind macs2

updated 3.9 years ago by Rory Stark ★ 4.6k • written 4.0 years ago by Anna • 0

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613

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diffbind macs2

updated 4.8 years ago by Rory Stark ★ 4.6k • written 4.8 years ago by Lauma R ▴ 10

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1.7k

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diffbind macs2 chip-seq

5.2 years ago chunhong.liu07 ▴ 10

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7.8k

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atac-seq diffbind macs2 macs peak finding

updated 5.9 years ago by BioinfGuru ▴ 20 • written 6.4 years ago by igor ▴ 40

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4.0k

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diffbind macs2

updated 7.1 years ago by Gord Brown ▴ 650 • written 7.1 years ago by tony ▴ 10

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Comment: pathview says my nonmodel species is unknown: "species invalid" by Guido Hooiveld ★ 3.5k

Does a restart of R help? Does a reinstall of the library `png` help? In a fresh R-session, what is the output from `BiocManager::valid()…

Comment: Don't let TopGo to trimm long GO names by James W. MacDonald 62k

Did you not notice that this has been answered *as part of this thread that you posted in?*

Comment: pathview says my nonmodel species is unknown: "species invalid" by nute11a • 0

Hi Luo, thank you so much for your helpful comment. While I was able to get this to work and visualize my interesting KEGG pathways (yay!) …

Comment: Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA) by Wolfgang Huber 13k

Hi Ben, your first step should be to upgrade to the current versions of R and Bioconductor. There is really little point in trouble-shooti…

Answer: Is ther an annotation package for sheep (Ovis aries) by Guido Hooiveld ★ 3.5k

Yes, there is! An `EnsDb` for sheep can be obtained through the so-called `AnnotationHub`. See James' and my posts in the thread linked t…

Votes

FDR and padj in deseq and edger

Comment: Mutect version, matched normal and manual curation in PureCN

Answer: Is ther an annotation package for sheep (Ovis aries)

Is ther an annotation package for sheep (Ovis aries)

Awards • All

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k