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MACS2
•
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0
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replies
66
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
8 days ago
yvonneh
• 0
0
votes
2
replies
867
views
ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
DESeq2
MACS2
17 months ago
vanbelj
▴ 30
0
votes
1
reply
1.8k
views
DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
ChIPSeq
SICER2
DiffBind
MACS2
offtopic
updated 3.0 years ago by
James W. MacDonald
65k • written 3.0 years ago by
Yuan Tian
▴ 280
0
votes
2
replies
1.4k
views
DiffBind consensus peak set
DiffBind
MACS2
updated 3.7 years ago by
Rory Stark
★ 5.2k • written 3.7 years ago by
ep15587
• 0
0
votes
2
replies
1.6k
views
DiffBind peaks input file format
DiffBind
macs2
updated 5.2 years ago by
Rory Stark
★ 5.2k • written 5.3 years ago by
Anna
• 0
0
votes
2
replies
958
views
Binding matrix creation DiffBind after MACS2 peak call
diffbind
macs2
updated 6.1 years ago by
Rory Stark
★ 5.2k • written 6.1 years ago by
Lauma R
▴ 10
1
vote
1
reply
2.2k
views
Importing Chip-Seq Peak MACS2 output (.xls) files into DBA object with Diffbind?
diffbind
macs2
chip-seq
6.4 years ago
chunhong.liu07
▴ 10
2
votes
3
replies
9.2k
views
DiffBind for ATAC-seq
atac-seq
diffbind
macs2
macs
peak finding
updated 7.2 years ago by
BioinfGuru
▴ 30 • written 7.7 years ago by
igor
▴ 40
2
votes
4
replies
4.9k
views
diffbind and macs2 output
diffbind
macs2
updated 8.4 years ago by
Gord Brown
▴ 650 • written 8.4 years ago by
tony
▴ 10
9 results • Page
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Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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