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MAPLOT
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1.0k
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Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 15 months ago by
ATpoint
★ 4.1k • written 15 months ago by
Michael
• 0
10
votes
8
replies
2.2k
views
MA plot
MAplot
15 months ago
Nathalie
▴ 20
0
votes
3
replies
2.3k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
sp
• 0
1
vote
1
reply
786
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 3.7 years ago by
Michael Love
42k • written 3.7 years ago by
evelas13
• 0
1
vote
2
replies
598
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 4.5 years ago by
Michael Love
42k • written 4.5 years ago by
rbronste
▴ 60
2
votes
2
replies
2.5k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 5.0 years ago by
Rory Stark
★ 5.2k • written 5.0 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.4k
views
MA plot scattering pattern
deseq2
MAplot
5.5 years ago
avitalwasser
• 0
5
votes
8
replies
1.3k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
rbronste
▴ 60
0
votes
4
replies
1.1k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 5.5 years ago by
Michael Love
42k • written 5.6 years ago by
ma619
• 0
0
votes
1
reply
1.6k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
phurbusang
• 0
2
votes
1
reply
2.1k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
rbronste
▴ 60
2
votes
4
replies
1.6k
views
DiffBind MA plot
diffbind
maplot
updated 6.3 years ago by
Rory Stark
★ 5.2k • written 6.3 years ago by
grundelphine
• 0
1
vote
2
replies
1.2k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 6.6 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
rbronste
▴ 60
0
votes
3
replies
2.7k
views
DESeq2 MA plot look different
deseq2
maplot
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
jshouse
▴ 10
3
votes
6
replies
1.9k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 7.8 years ago by
Gordon Smyth
50k • written 7.8 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.2k
views
error while running MAplot
MAplot
rnaseq
cummerbund
8.1 years ago
kritikamish99
▴ 10
16 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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