Bioconductor MAplot

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DESeq2 MAplot

updated 23 months ago by ATpoint ★ 4.6k • written 23 months ago by Michael • 0

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2.9k

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MAplot

24 months ago Nathalie ▴ 20

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3.2k

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DESeq2 MAplot deseq

updated 3.9 years ago by Michael Love 43k • written 3.9 years ago by sp • 0

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968

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deseq2 MAplot lfcshrink

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by evelas13 • 0

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756

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deseq2 maplot annotation

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by rbronste ▴ 60

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3.2k

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diffbind R MAplot Chipseq

updated 5.7 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by melnuesch ▴ 10

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1.6k

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deseq2 MAplot

6.2 years ago avitalwasser • 0

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1.5k

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deseq2 maplot

updated 6.2 years ago by James W. MacDonald 67k • written 6.2 years ago by rbronste ▴ 60

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1.3k

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deseq2 normalization maplot rnaseq

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by ma619 • 0

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1.7k

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MAPLOT DESEQ2 RNASEQ

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by phurbusang • 0

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2.4k

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deseq2 maplot subset

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by rbronste ▴ 60

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1.9k

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diffbind maplot

updated 7.0 years ago by Rory Stark ★ 5.2k • written 7.0 years ago by grundelphine • 0

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1.5k

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diffbind deseq2 maplot

updated 7.3 years ago by Rory Stark ★ 5.2k • written 7.3 years ago by rbronste ▴ 60

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2.9k

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deseq2 maplot

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by jshouse ▴ 10

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2.1k

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edgeR MAplot rnaseq differential gene expression

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by joseph.bergenstrahle • 0

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1.4k

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MAplot rnaseq cummerbund

8.8 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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