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MAplot
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0
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2
replies
1.2k
views
Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 17 months ago by
ATpoint
★ 4.2k • written 17 months ago by
Michael
• 0
10
votes
8
replies
2.4k
views
MA plot
MAplot
18 months ago
Nathalie
▴ 20
0
votes
3
replies
2.6k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 3.4 years ago by
Michael Love
42k • written 3.4 years ago by
sp
• 0
1
vote
1
reply
838
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 3.9 years ago by
Michael Love
42k • written 3.9 years ago by
evelas13
• 0
1
vote
2
replies
644
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 4.7 years ago by
Michael Love
42k • written 4.7 years ago by
rbronste
▴ 60
2
votes
2
replies
2.7k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 5.2 years ago by
Rory Stark
★ 5.2k • written 5.2 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.4k
views
MA plot scattering pattern
deseq2
MAplot
5.7 years ago
avitalwasser
• 0
5
votes
8
replies
1.3k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 5.7 years ago by
James W. MacDonald
66k • written 5.7 years ago by
rbronste
▴ 60
0
votes
4
replies
1.2k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
ma619
• 0
0
votes
1
reply
1.6k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 6.5 years ago by
Michael Love
42k • written 6.5 years ago by
phurbusang
• 0
2
votes
1
reply
2.1k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.5 years ago by
Michael Love
42k • written 6.5 years ago by
rbronste
▴ 60
2
votes
4
replies
1.7k
views
DiffBind MA plot
diffbind
maplot
updated 6.5 years ago by
Rory Stark
★ 5.2k • written 6.5 years ago by
grundelphine
• 0
1
vote
2
replies
1.3k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 6.8 years ago by
Rory Stark
★ 5.2k • written 6.8 years ago by
rbronste
▴ 60
0
votes
3
replies
2.8k
views
DESeq2 MA plot look different
deseq2
maplot
updated 6.8 years ago by
Michael Love
42k • written 6.8 years ago by
jshouse
▴ 10
3
votes
6
replies
1.9k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 7.9 years ago by
Gordon Smyth
51k • written 7.9 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.3k
views
error while running MAplot
MAplot
rnaseq
cummerbund
8.3 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
▴ 180
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Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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Gordon Smyth
51k
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