Bioconductor Model

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750

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DESeq2 LRT Model

updated 2.2 years ago by Michael Love 42k • written 2.2 years ago by JaneDoe • 0

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998

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model BatchEffect hidden Design DESeq2

2.6 years ago m.glymenaki • 0

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1.1k

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DESeq2 ErrorincheckFullRank(modelMatrix) model

updated 3.6 years ago by Michael Love 42k • written 3.6 years ago by Isabelle • 0

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958

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diffbind blocking model

updated 3.6 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by melnuesch ▴ 10

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1.0k

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deseq2 interaction model

updated 4.0 years ago by Michael Love 42k • written 4.0 years ago by aec ▴ 90

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2.0k

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limma dose-response linear model model formula

updated 6.5 years ago by James W. MacDonald 66k • written 6.5 years ago by biominer ▴ 10

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2.2k

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edgeR edger "glmqlftest()" timecourse model

updated 6.9 years ago by Ryan C. Thompson ★ 7.9k • written 6.9 years ago by heikki.sarin ▴ 10

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2.3k

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egdeR multiple time points model.matrix differential exon usage model

6.9 years ago heikki.sarin ▴ 10

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1.2k

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dexseq timecourse model.matrix model

6.9 years ago heikki.sarin ▴ 10

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1.5k

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dexseq rna-seq model.matrix model

updated 6.9 years ago by Michael Love 42k • written 6.9 years ago by heikki.sarin ▴ 10

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1.6k

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EdgeR rank model

6.9 years ago philip.freda • 0

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1.8k

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deseq2 experimental design timecourse rnaseq model

updated 7.6 years ago by Michael Love 42k • written 7.6 years ago by athief ▴ 20

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925

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Deseq2 model

7.9 years ago jrivera • 0

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3.0k

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deseq2 model

updated 8.9 years ago by Simon Anders ★ 3.7k • written 8.9 years ago by da.de ▴ 30

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2.2k

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limma goodness fit linear model

updated 9.4 years ago by Gordon Smyth 51k • written 9.4 years ago by nonCodingGene ▴ 10

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9.0k

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DESeq2 linear model model

updated 3.1 years ago by Michael Love 42k • written 9.6 years ago by andrew.j.skelton73 ▴ 370

16 results • Page 1 of 1

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Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…

Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0

Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …

Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0

I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Votes

A: limma: comparison of repeat measurements - blocking or within-subject correlatio

A: dream vignette says limma-voom repeated measures two-group comparison needs two

Answer: Get the latest gene name from Entrez ID

Get the latest gene name from Entrez ID

Answer: biomaRt not working - lazy table error

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