Bioconductor Model

Showing : Model • reset

vote

replies

913

views

Deseq2 model

7.8 years ago jrivera • 0

vote

replies

2.2k

views

limma goodness fit linear model

updated 9.3 years ago by Gordon Smyth 50k • written 9.3 years ago by nonCodingGene ▴ 10

vote

replies

1.5k

views

EdgeR rank model

6.9 years ago philip.freda • 0

votes

729

views

DESeq2 LRT Model

updated 2.2 years ago by Michael Love 42k • written 2.2 years ago by JaneDoe • 0

votes

3.0k

views

deseq2 model

updated 8.9 years ago by Simon Anders ★ 3.7k • written 8.9 years ago by da.de ▴ 30

votes

replies

1.8k

views

deseq2 experimental design timecourse rnaseq model

updated 7.6 years ago by Michael Love 42k • written 7.6 years ago by athief ▴ 20

votes

replies

966

views

model BatchEffect hidden Design DESeq2

2.6 years ago m.glymenaki • 0

votes

replies

9.0k

views

DESeq2 linear model model

updated 3.0 years ago by Michael Love 42k • written 9.5 years ago by andrew.j.skelton73 ▴ 370

votes

replies

2.3k

views

egdeR multiple time points model.matrix differential exon usage model

6.8 years ago heikki.sarin ▴ 10

votes

replies

2.2k

views

edgeR edger "glmqlftest()" timecourse model

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by heikki.sarin ▴ 10

votes

replies

2.0k

views

limma dose-response linear model model formula

updated 6.5 years ago by James W. MacDonald 66k • written 6.5 years ago by biominer ▴ 10

votes

replies

945

views

diffbind blocking model

updated 3.6 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by melnuesch ▴ 10

vote

replies

1.0k

views

deseq2 interaction model

updated 3.9 years ago by Michael Love 42k • written 3.9 years ago by aec ▴ 90

vote

1.1k

views

DESeq2 ErrorincheckFullRank(modelMatrix) model

updated 3.5 years ago by Michael Love 42k • written 3.5 years ago by Isabelle • 0

votes

1.4k

views

dexseq rna-seq model.matrix model

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by heikki.sarin ▴ 10

votes

replies

1.2k

views

dexseq timecourse model.matrix model

6.8 years ago heikki.sarin ▴ 10

16 results • Page 1 of 1

Recent ...

Replies

Comment: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …

Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0

Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…

Votes

DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

DESeq2 swap ensembl gene id rownames with gene symbol column

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

DESeq2: add annotations (from data frame) to DESeqDataSet

Add new columns to DESeqResults from text file by matching rownames.

Awards • All

Popular Question to Robert Castelo ★ 3.3k