Bioconductor Model

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DESeq2 linear model model

updated 3.0 years ago by Michael Love 42k • written 9.5 years ago by andrew.j.skelton73 ▴ 370

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3.0k

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deseq2 model

updated 8.9 years ago by Simon Anders ★ 3.7k • written 8.9 years ago by da.de ▴ 30

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2.3k

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egdeR multiple time points model.matrix differential exon usage model

6.8 years ago heikki.sarin ▴ 10

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2.2k

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edgeR edger "glmqlftest()" timecourse model

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by heikki.sarin ▴ 10

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2.2k

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limma goodness fit linear model

updated 9.3 years ago by Gordon Smyth 50k • written 9.3 years ago by nonCodingGene ▴ 10

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2.0k

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limma dose-response linear model model formula

updated 6.5 years ago by James W. MacDonald 66k • written 6.5 years ago by biominer ▴ 10

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1.8k

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deseq2 experimental design timecourse rnaseq model

updated 7.6 years ago by Michael Love 42k • written 7.6 years ago by athief ▴ 20

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1.5k

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EdgeR rank model

6.9 years ago philip.freda • 0

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1.4k

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dexseq rna-seq model.matrix model

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by heikki.sarin ▴ 10

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1.2k

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dexseq timecourse model.matrix model

6.8 years ago heikki.sarin ▴ 10

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1.1k

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DESeq2 ErrorincheckFullRank(modelMatrix) model

updated 3.5 years ago by Michael Love 42k • written 3.5 years ago by Isabelle • 0

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1.0k

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deseq2 interaction model

updated 3.9 years ago by Michael Love 42k • written 3.9 years ago by aec ▴ 90

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966

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model BatchEffect hidden Design DESeq2

2.6 years ago m.glymenaki • 0

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945

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diffbind blocking model

updated 3.6 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by melnuesch ▴ 10

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913

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Deseq2 model

7.8 years ago jrivera • 0

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729

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DESeq2 LRT Model

updated 2.2 years ago by Michael Love 42k • written 2.2 years ago by JaneDoe • 0

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Comment: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …

Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0

Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…

Votes

A: Analyzing data without replicates using DiffBind

DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

DESeq2 swap ensembl gene id rownames with gene symbol column

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

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Popular Question to Robert Castelo ★ 3.3k