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MotifbreakR
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Is there a function that takes an amino acid string and returns all biologically possible substitutions?
Biostrings
aminoacid
motifbreakR
written 5 months ago by
wilson_ava
• 0
0
votes
0
replies
1.2k
views
motifBreakR error with custom BSgenome
GenomeInfoDb
motifbreakR
3.8 years ago
Chris Seidel
▴ 80
0
votes
0
replies
1.1k
views
How are the MotifbreakR scores calculated, and how do they relate to one another?
MotifbreakR
R
motifs
5.8 years ago
camerond
• 0
2
votes
5
replies
2.9k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 6.7 years ago by
Valerie Obenchain
★ 6.8k • written 6.7 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.1k
views
Motif Breaker error
bioconductor
motifbreakr
plotmb
7.2 years ago
priyankaraina10
• 0
0
votes
2
replies
1.4k
views
motifbreakR VariantAnnotation namespace error on reading vcf file
motifbreakR
variantannotation
updated 9.3 years ago by
Simon Coetzee
▴ 50 • written 9.3 years ago by
ashley.doane
▴ 20
6 results • Page
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Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `ntd()` or `vst/…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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