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MotifbreakR
•
reset
0
votes
0
replies
881
views
motifBreakR error with custom BSgenome
GenomeInfoDb
motifbreakR
3.0 years ago
Chris Seidel
▴ 80
0
votes
0
replies
877
views
How are the MotifbreakR scores calculated, and how do they relate to one another?
MotifbreakR
R
motifs
5.0 years ago
camerond
• 0
2
votes
5
replies
2.5k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 5.8 years ago by
Valerie Obenchain
★ 6.8k • written 5.9 years ago by
svlachavas
▴ 830
0
votes
0
replies
855
views
Motif Breaker error
bioconductor
motifbreakr
plotmb
6.4 years ago
priyankaraina10
• 0
0
votes
2
replies
1.2k
views
motifbreakR VariantAnnotation namespace error on reading vcf file
motifbreakR
variantannotation
updated 8.5 years ago by
Simon Coetzee
▴ 50 • written 8.5 years ago by
ashley.doane
▴ 20
5 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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Gordon Smyth
50k
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Chris
• 0
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