Showing : Oligo • reset
0
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An error in oligo: All the CEL files must be of the same type??
BiocViews Annotation Organism biocViews oligo BiocViews BiocViews Annotation Organism
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 20
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15
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3.5k
views
PreFiltering probe in microarray analysis
Microarray limma oligo Microarray limma oligo
updated 14.5 years ago by ▴ 220 • written 14.5 years ago by ▴ 30
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1
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1.5k
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oligo read celfile
GO oligo GO oligo
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 170
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1
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1.2k
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differences between "manual" boxplots and "standard" boxplots of a oligo object
oligo oligo
updated 14.6 years ago by ★ 4.3k • written 14.6 years ago by ▴ 840
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4
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xmapcore
probe oligo probe oligo
updated 14.7 years ago by ▴ 250 • written 14.7 years ago by ▴ 40
0
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0
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779
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From exon array CEL to XMAP annotation, what am I missing?
Annotation Normalization probe oligo xmapcore Annotation Normalization probe oligo
14.7 years ago ekspiulo ▴ 40
0
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1
reply
1.3k
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QC for st gene arrays
GO oligo GO oligo
updated 14.8 years ago by ★ 4.3k • written 14.8 years ago by ▴ 170
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2
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1.4k
views
crlmm error in Mac OS
oligo crlmm oligo crlmm
updated 14.8 years ago by 6.7k • written 14.8 years ago by ▴ 10
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1
reply
874
views
oligo package
oligo oligo
updated 14.8 years ago by ★ 8.2k • written 14.8 years ago by ▴ 170
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1.8k
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PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
15.0 years ago Roman ▴ 20
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2
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2.0k
views
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 15.0 years ago by ▴ 120 • written 15.0 years ago by ▴ 10
0
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2
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2.2k
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PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 15.0 years ago by ★ 4.3k • written 15.0 years ago by ▴ 120
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1
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1.4k
views
RMA median Polish in Oligo package
oligo oligo
updated 15.0 years ago by ★ 4.3k • written 15.0 years ago by ▴ 60
0
votes
2
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1.4k
views
Loading Niblegen Files to Oligo
oligo oligo
updated 15.1 years ago by ★ 4.3k • written 15.1 years ago by ▴ 10
0
votes
3
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1.2k
views
Oligo package crlmm method
SNP oligo crlmm SNP oligo crlmm
updated 15.2 years ago by ★ 4.3k • written 15.2 years ago by ★ 4.3k
0
votes
1
reply
942
views
squaring each element of an expression set
oligo oligo
updated 15.2 years ago by ★ 1.1k • written 15.2 years ago by ▴ 80
0
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4
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1.5k
views
annotation for new agilent arrays
Annotation oligo Annotation oligo
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ★ 1.1k
0
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0
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1.3k
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Need help with pdInfoBuilder package for human ST arrays
Annotation affy oligo pdInfoBuilder Annotation affy oligo pdInfoBuilder
15.4 years ago He, Yiwen NIH/CIT ▴ 360
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0
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848
views
xps - creating ROOT scheme fi les
Annotation Preprocessing cdf PROcess oligo xps Annotation Preprocessing cdf PROcess xps
15.5 years ago Benilton Carvalho ★ 4.3k
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1
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2.2k
views
boxplot error with expression set using oligo package and Human gene st 1.0 arrays
oligo DECIPHER oligo DECIPHER
updated 15.5 years ago by ★ 4.3k • written 15.5 years ago by ▴ 40
0
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0
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1.5k
views
Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
15.5 years ago Dick Beyer ★ 1.4k
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0
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1.4k
views
GEOquery error when parsing Agilent annotation (?)
Annotation GEOquery oligo Annotation GEOquery oligo
15.5 years ago Axel Klenk ★ 1.1k
0
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6
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1.9k
views
Human Gene ST using oligo package
Annotation oligo Annotation oligo
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ▴ 840
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0
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1.1k
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LIMMA
limma oligo limma oligo
15.6 years ago Tan, Yifang ▴ 50
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0
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1.0k
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limma help - choosing an approach
limma oligo limma oligo
15.6 years ago Tan, Yifang ▴ 50
0
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0
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1.1k
views
Bioconductor Digest, Vol 86, Issue 19
cdf affy oligo cdf affy oligo
15.6 years ago Sherri Christian ▴ 20
0
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1
reply
1.1k
views
Interpretation of genotype calls from Oligo crlmm algorithm
SNP oligo crlmm SNP oligo crlmm
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ▴ 150
0
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8
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2.6k
views
pdInfoBuilder: invalid class object ("ScalarCharacter")
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 15.7 years ago by 6.7k • written 15.7 years ago by ★ 4.1k
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6
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2.0k
views
QC Affy 6.0 SNP arrays with crlmm or Oligo?
Normalization oligo crlmm Normalization oligo crlmm
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ▴ 150
0
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0
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908
views
FW: Bioconductor
affy oligo affy oligo
15.7 years ago Dana.Stanley@csiro.au ▴ 110
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3
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2.0k
views
[MAANOVA] Warnings in fitmaanova & information request
maanova oligo maanova oligo
15.7 years ago boczniak767 ▴ 740
0
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10
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3.5k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray Normalization cdf oligo DTA Microarray Normalization cdf oligo DTA
updated 15.8 years ago by ★ 4.3k • written 15.8 years ago by ▴ 110
0
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2
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1.6k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray Annotation Normalization Preprocessing cdf probe affy affyPLM oligo Microarray
updated 15.8 years ago by ★ 1.2k • written 15.8 years ago by ★ 4.3k
0
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6
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2.1k
views
PdInfoBuilder for nimblegen array
Annotation Organism oligo pdInfoBuilder Annotation Organism oligo pdInfoBuilder
updated 15.8 years ago by ★ 4.3k • written 15.8 years ago by ▴ 40
0
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2
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1.3k
views
Agilent annotation source
Annotation hgug4112a oligo Annotation hgug4112a oligo
updated 15.8 years ago by 68k • written 15.8 years ago by ★ 1.1k
0
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3
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1.6k
views
oligo package cannot read files when gdata is loaded
Biobase oligo Biobase oligo
15.8 years ago Benilton Carvalho ★ 4.3k
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0
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1.1k
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oligo package cannot read files when gdata is loaded
oligo oligo
15.9 years ago Heidi Dvinge ★ 2.0k
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2
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1.8k
views
vsn and oligo (or xps?) packages for GeneST expression arrays
vsn oligo xps vsn oligo xps
updated 15.9 years ago by ★ 3.9k • written 15.9 years ago by ▴ 270
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0
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760
views
How to get mapping from probe_id to probeset_id in Mouse Exon Array?
oligo oligo
15.9 years ago Peng Yu ▴ 950
0
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1
reply
1.1k
views
HuGene transcript expression workflow -
Annotation GO limma oligo Annotation GO limma oligo
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 10
0
votes
5
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1.6k
views
different normalized results using oneChannelGUI, and oligo packages
Normalization limma oligo oneChannelGUI Normalization limma oligo oneChannelGUI
updated 16.1 years ago by ★ 4.3k • written 16.1 years ago by ▴ 500
0
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1
reply
1.6k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 16.1 years ago by ▴ 430 • written 16.1 years ago by ▴ 410
0
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1
reply
1.6k
views
different normalized results using oneChannelGUI and oligo packages
GO limma oligo oneChannelGUI GO limma oligo oneChannelGUI
updated 16.1 years ago by ★ 4.3k • written 16.1 years ago by ▴ 840
0
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4
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1.3k
views
affy 10k
Annotation oligo Annotation oligo
updated 16.1 years ago by 6.7k • written 16.1 years ago by ▴ 100
0
votes
5
replies
2.7k
views
Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets
Preprocessing cdf oligo oneChannelGUI Preprocessing cdf oligo oneChannelGUI
updated 16.1 years ago by ★ 4.3k • written 16.1 years ago by ▴ 840
0
votes
2
replies
2.1k
views
Affymetrix Mouse Promoter array / pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 16.2 years ago by ▴ 50 • written 16.2 years ago by ▴ 330
0
votes
9
replies
1.9k
views
pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R
oligo oligo
updated 16.2 years ago by ★ 4.3k • written 16.2 years ago by ▴ 50
0
votes
1
reply
1.0k
views
Oligo package
oligo oligo
updated 16.2 years ago by ★ 4.3k • written 16.2 years ago by ▴ 10
0
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2
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1.1k
views
problem with Oligo package when analyzing SNP6.0
affy oligo affy oligo
updated 16.3 years ago by ★ 4.3k • written 16.3 years ago by ▴ 20
0
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4
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1.8k
views
Read.maimages Error reading 'Genepix results file 2' version files
Microarray limma oligo Microarray limma oligo
updated 16.3 years ago by ▴ 1000 • written 16.3 years ago by ▴ 30
430 results • Page 6 of 9
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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