Showing : Oligo • reset
0
votes
5
replies
1.3k
views
Inconsistency in RMA results from 'affy' and results from 'oligo'
Annotation cdf oligo Annotation cdf oligo
updated 16.2 years ago by ★ 13k • written 16.2 years ago by ▴ 950
0
votes
2
replies
1.3k
views
Inconsistency in RMA results from 'affy' and results from 'oligo'
cdf oligo cdf oligo
updated 16.2 years ago by ★ 4.3k • written 16.2 years ago by ▴ 950
0
votes
0
replies
770
views
makePdInfoPackage in preparation for RMA with oligo on Nimblegen Expression Arrays
Annotation oligo Annotation oligo
16.2 years ago Jack Schonbrun ▴ 50
0
votes
2
replies
2.7k
views
pd.hugene.1.0.st.v1
Epigenetics Annotation oligo Epigenetics Annotation oligo
updated 16.2 years ago by ★ 4.3k • written 16.2 years ago by ★ 1.1k
0
votes
1
reply
1.8k
views
pd.hugene.1.0.st.v1
oligo oligo
updated 16.2 years ago by 6.7k • written 16.2 years ago by ★ 1.1k
0
votes
3
replies
1.4k
views
makePdInfoPackage in preparation for RMA with oligo on Nimblegen Expression Arrays
Annotation oligo Annotation oligo
16.2 years ago Jack Schonbrun ▴ 50
0
votes
4
replies
1.7k
views
Oligo error on OS X Leopard
Cancer oligo Cancer oligo
updated 16.3 years ago by 6.7k • written 16.3 years ago by ★ 1.9k
0
votes
0
replies
1.2k
views
problem with pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
16.4 years ago Elsa Aguera ▴ 10
0
votes
10
replies
2.4k
views
One-color spotted microarrays analysis
Microarray Normalization oligo Microarray Normalization oligo
updated 16.4 years ago by ★ 13k • written 16.4 years ago by ▴ 30
0
votes
0
replies
902
views
intraSpotCorrelation
oligo oligo
16.4 years ago Gordon Smyth 53k
0
votes
0
replies
1.0k
views
limma separate channel analysis: extremely low consensus intraspotcorrelation
oligo oligo
16.4 years ago Thierry Janssens ▴ 40
0
votes
0
replies
1.6k
views
Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.4 years ago Min-Han Tan ▴ 40
0
votes
2
replies
1.9k
views
About Volcano Plot
oligo oligo
updated 16.4 years ago by ▴ 750 • written 16.4 years ago by ▴ 380
0
votes
2
replies
1.4k
views
Question regarding Affy SNP 5.0/BI_SNP arrays
SNP Annotation cdf affy PROcess oligo SNP Annotation cdf affy PROcess oligo
updated 16.4 years ago by ▴ 40 • written 16.4 years ago by ▴ 120
0
votes
2
replies
2.4k
views
RMA implemented in oligo package vs affy package
ExperimentData cdf affy PROcess oligo ExperimentData cdf affy PROcess oligo
16.5 years ago heyi xiao ▴ 360
0
votes
1
reply
966
views
AnnotationDbi problem.
Annotation oligo Annotation oligo
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ▴ 30
0
votes
5
replies
1.5k
views
xps rma() with HuGene-1_0-st-v1 on 64-bit architecture
Annotation Preprocessing probe oligo xps Annotation Preprocessing probe oligo xps
updated 16.6 years ago by ★ 3.9k • written 16.6 years ago by ▴ 270
0
votes
0
replies
700
views
NormalizationWithinArrays
oligo oligo
16.8 years ago Priscila Grynberg ▴ 380
0
votes
0
replies
1.4k
views
Affymetrix Array Rat Gene 1.0 ST - some annotation challenges
Annotation Normalization probe affy PROcess oligo exonmap Annotation Normalization probe
16.9 years ago Alexander C Cambon ▴ 30
0
votes
2
replies
2.0k
views
Custom CDF files
Annotation GO cdf affy PROcess oligo pdInfoBuilder Annotation GO cdf affy PROcess
updated 16.9 years ago by ★ 1.1k • written 16.9 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Oligo:read.xysfiles fails
PROcess oligo PROcess oligo
16.9 years ago Mikko Arvas ▴ 90
0
votes
2
replies
1.3k
views
PdInfobuilder: Preparing data from Affymetrix HuGene expression arrays
affy oligo affy oligo
updated 16.9 years ago by 21k • written 16.9 years ago by ▴ 100
0
votes
1
reply
1.5k
views
PdInfobuilder: Preparing data from Affymetrix HuGene expression arrays
affy oligo affy oligo
updated 16.9 years ago by 21k • written 16.9 years ago by ▴ 100
0
votes
2
replies
1.1k
views
quantile normalization with common standards
GO oligo GO oligo
updated 16.9 years ago by ★ 13k • written 16.9 years ago by ▴ 150
0
votes
3
replies
1.3k
views
multicore processor
oligo oligo
updated 17.0 years ago by ▴ 500 • written 17.0 years ago by ▴ 20
0
votes
1
reply
785
views
help with using pdInfoBuilder and oligo for Affy Gene Set arrays
affy oligo affy oligo
updated 17.0 years ago by 68k • written 17.0 years ago by ▴ 830
0
votes
1
reply
938
views
Human gene 1.0 st analysis
oligo oligo
updated 17.0 years ago by ★ 1.1k • written 17.0 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 17.0 years ago by ▴ 70
0
votes
2
replies
1.6k
views
Getting dChip SNP intensity in BioC?
SNP oligo SNP oligo
updated 17.0 years ago by ★ 2.4k • written 17.0 years ago by ★ 3.9k
0
votes
2
replies
1.4k
views
Question about using Biostrings & BSgenome
oligo oligo
updated 17.1 years ago by ▴ 730 • written 17.1 years ago by ★ 1.9k
0
votes
0
replies
1.5k
views
Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
17.1 years ago Ludo Muller ▴ 50
0
votes
0
replies
1.3k
views
Limma-design matrix for technical replication
Microarray Genetics oligo Microarray Genetics oligo
17.2 years ago Gordon Smyth 53k
0
votes
1
reply
1.5k
views
Limma-design matrix for technical replication
Genetics oligo Genetics oligo
updated 17.2 years ago by ★ 2.0k • written 17.2 years ago by ▴ 10
0
votes
1
reply
963
views
oligo package - affymetrix tiling arrays.
oligo oligo
updated 17.2 years ago by ★ 1.1k • written 17.2 years ago by ▴ 480
0
votes
0
replies
1.7k
views
gcRMA on a GeneFeatureSet from Affy MoGene 1.0 ST v1?
Annotation probe affy gcrma PROcess oligo Annotation probe affy gcrma PROcess oligo
17.2 years ago Jean Hausser ▴ 20
0
votes
4
replies
1.2k
views
rma for tiling arrays (oligo package)
oligo oligo
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 340
0
votes
0
replies
1.0k
views
how to get oligoSnpSet object?
SNP oligo SNP oligo
17.2 years ago Yupu Liang ▴ 50
0
votes
0
replies
1.1k
views
Problem with makePDpackage in makePlatformDesign and getCdfInfo in affy
cdf affy gcrma oligo makePlatformDesign cdf affy gcrma oligo makePlatformDesign
17.2 years ago Benjamin Lansdell ▴ 30
0
votes
3
replies
1.3k
views
Drosophila tiling array background correction
cdf probe oligo cdf probe oligo
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 30
0
votes
2
replies
1.5k
views
RSQLite error when using AnnotationDbi/SQLForge
oligo oligo
updated 17.2 years ago by ▴ 760 • written 17.2 years ago by ▴ 270
0
votes
1
reply
784
views
error when using GOstats with AnnBuilder built package
Annotation GO GOstats oligo Annotation GO GOstats oligo
updated 17.2 years ago by ★ 7.2k • written 17.2 years ago by ▴ 270
0
votes
4
replies
3.1k
views
topGO w/custom annotation
Annotation GO oligo Annotation GO oligo
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 370
0
votes
0
replies
1.1k
views
affy mouse promoter tiling array analysis
Normalization oligo makePlatformDesign Normalization oligo makePlatformDesign
17.4 years ago Naira Naouar ▴ 140
0
votes
3
replies
1.5k
views
R help with large matrices
oligo BAC oligo BAC
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 70
0
votes
1
reply
1.5k
views
Is it possible to use RMA on Agilent Data
Organism Arabidopsis thaliana probe affy oligo Organism Arabidopsis thaliana probe affy
updated 17.6 years ago by ★ 1.3k • written 17.6 years ago by ▴ 110
0
votes
0
replies
987
views
Help with Affy TilingArray makePDpackage
oligo oligo
17.7 years ago Owen Thomas ▴ 40
0
votes
4
replies
2.0k
views
Help with Affy TilingArray makePDpackage
affyio oligo affyio oligo
updated 17.7 years ago by ★ 1.2k • written 17.7 years ago by ▴ 40
0
votes
3
replies
2.0k
views
CGHcall error
Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC
updated 17.7 years ago by ★ 2.4k • written 17.7 years ago by ▴ 110
0
votes
0
replies
654
views
affy Package
oligo oligo
17.8 years ago Naomi Altman ★ 6.0k
0
votes
5
replies
1.2k
views
different density
oligo oligo
updated 17.8 years ago by ★ 6.0k • written 17.8 years ago by ▴ 20
430 results • Page 7 of 9
Recent ...
Replies
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error by James W. MacDonald 68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Popular Question to Joseph • 0
Popular Question to zhe ▴ 20
Popular Question to Natalia • 0
Locations • All
WEHI, Melbourne, Australia, 27 minutes ago
The Netherlands, 2 hours ago
The city by the bay, 2 hours ago
Vietnam, 2 hours ago
United States, 2 hours ago
Traffic: 981 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6