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Ontology
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reset
4
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2
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2.0k
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Is there any description available for KEGG Pathway Edge Types
KEGG
SystemsBiology
KEGGgraph
ontology
19 months ago
Wuschel
▴ 10
1
vote
0
replies
801
views
adjusted p-values with topGO elim.KS method
topGO
Ontology
DifferentialExpression
20 months ago
Kevin Gregory
▴ 10
1
vote
2
replies
739
views
gene ontologies for a set of genes
gene
ontology
2.8 years ago
Bogdan
▴ 670
1
vote
5
replies
1.3k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
babak.loghmani
▴ 20
3
votes
3
replies
1.2k
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
t.bergmann
• 0
1
vote
1
reply
1.2k
views
News:
Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology
go
ontology
bioinformatics
genomics
News
5.6 years ago
laurent.albou
• 0
3
votes
3
replies
1.1k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO
ontology
GO.db
updated 5.7 years ago by
apkmirrorproject
• 0 • written 5.7 years ago by
marcinjoachimiak
▴ 10
7 results • Page
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed oneā¦
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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