Bioconductor SystemsBiology

Showing : SystemsBiology • reset

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523

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Bioconductor Network RNASeqData SystemsBiology

9 months ago info ▴ 10

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1.9k

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KEGG SystemsBiology KEGGgraph ontology

18 months ago Wuschel ▴ 10

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1.1k

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systemsbiology network analysis drugvsdisease Job

7.9 years ago jing.tang • 0

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postdoc bioinformatics network analysis australia systemsbiology Job

8.0 years ago david.lynn • 0

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2.2k

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bioinformatics systemsbiology cancer job austria Job

8.8 years ago • updated 8.7 years ago heinrich.kovar ▴ 10

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9.0 years ago Federico Marini ▴ 150

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1.8k

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visualization genomics personalized medicine systemsbiology js Job

9.1 years ago Hamid Bolouri ▴ 50

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job computational biology genomics cancer systemsbiology Job

9.4 years ago Shamith.Samarajiwa ▴ 180

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1.5k

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systemsbiology bioinformatics position Job

9.6 years ago Thomas Girke ★ 1.7k

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SystemsBiology Network RCytoscape SystemsBiology Network RCytoscape

10.3 years ago Paul Shannon ▴ 750

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1.3k

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SystemsBiology lumi SystemsBiology lumi

updated 13.2 years ago by Sean Davis 21k • written 13.2 years ago by Pan Du ★ 1.2k

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SystemsBiology Pathways Cancer SPIA SystemsBiology Pathways Cancer SPIA

14.4 years ago Tarca, Adi ▴ 570

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Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO

16.5 years ago McGee, Monnie ▴ 300

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SystemsBiology graph SystemsBiology graph

updated 16.6 years ago by Seth Falcon ★ 7.4k • written 16.6 years ago by Martin Morgan 25k

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886

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SystemsBiology Cancer graph biomaRt SystemsBiology Cancer graph biomaRt

16.6 years ago Seth Falcon ★ 7.4k

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SystemsBiology Regression probe limma SystemsBiology Regression probe limma

updated 17.0 years ago by Paul Shannon ★ 1.1k • written 17.0 years ago by Gordon Smyth 50k

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994

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SystemsBiology graph RBGL SystemsBiology graph RBGL

18.0 years ago Seth Falcon ★ 7.4k

17 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…

Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

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biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0