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Outlier
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4
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5
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6.6k
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outlier detection of RNAseq samples
deseq2
rnaseq
PCA
hierarchical clustering
outlier
7.4 years ago
wd
▴ 30
2
votes
3
replies
1.5k
views
RNAseq outlier is a critical sample
rnaseq
outlier
statistics
batch effect
updated 7.9 years ago by
Gordon Smyth
50k • written 7.9 years ago by
grastalt27
• 0
0
votes
2
replies
1.2k
views
Which genes are outliers in DESeq2?
DESeq2
RNAseq
outlier
updated 15 months ago by
ATpoint
★ 4.1k • written 15 months ago by
James
• 0
1
vote
8
replies
1.9k
views
[Outlier Gene removal] - One sample with outlier counts for some genes
RNAseq
DESeq2
outlier
counts
DE analysis
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
DcL-A
• 0
1
vote
7
replies
4.6k
views
DESeq2 outlier detection not filtering
DESeq2
outlier
RNASeq
updated 9.4 years ago by
Michael Love
42k • written 9.4 years ago by
kenneth.daily
• 0
0
votes
1
reply
445
views
Outlier removal outcome
Outlier
updated 14 months ago by
ATpoint
★ 4.1k • written 14 months ago by
sanchita.bhattacharya
• 0
1
vote
1
reply
1.3k
views
arrayQualityMetrics for outlier detection
arrayQualityMetrics
Microarray
Outlier
updated 8.5 years ago by
Wolfgang Huber
★ 13k • written 8.5 years ago by
horcsct
▴ 10
1
vote
3
replies
750
views
DE analysis outlier removal
deseq2
outlier
normalization
removal
updated 4.2 years ago by
Michael Love
42k • written 4.2 years ago by
knholm
• 0
8 results • Page
1 of 1
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Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
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Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: minfi latest update for EPIC V2 chip
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
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