Biostar Outlier

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Outlier

updated 3 days ago by ATpoint ★ 2.4k • written 13 days ago by sanchita.bhattacharya • 0

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170

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DESeq2 RNAseq outlier

updated 6 weeks ago by ATpoint ★ 2.4k • written 6 weeks ago by James • 0

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1.1k

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RNAseq DESeq2 outlier counts DE analysis

updated 2.8 years ago by Kevin Blighe 3.8k • written 2.8 years ago by DcL-A • 0

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436

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deseq2 outlier normalization removal

updated 3.0 years ago by Michael Love 39k • written 3.0 years ago by knholm • 0

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5.5k

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deseq2 rnaseq PCA hierarchical clustering outlier

6.3 years ago wd ▴ 30

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1.1k

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rnaseq outlier statistics batch effect

updated 6.8 years ago by Gordon Smyth 47k • written 6.8 years ago by grastalt27 • 0

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971

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arrayQualityMetrics Microarray Outlier

updated 7.3 years ago by Wolfgang Huber 13k • written 7.3 years ago by horcsct ▴ 10

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4.1k

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DESeq2 outlier RNASeq

updated 8.3 years ago by Michael Love 39k • written 8.3 years ago by kenneth.daily • 0

8 results • Page 1 of 1

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Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0

That's great. Thank you for clarifying the confusion. Cheers,

Comment: minfi support of illumina Infinium methylationEPIC v2.0 by luca.s ▴ 40

Tank you James. All fine, but for preprocessIllumina, which apparently won't work

Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

As an exercise I've tried to analyze simpler but similar experiment. The data is from real experiment (E-MTAB-11224) comparing wild type an…

Answer: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

Asking for multiple things at once will tend to blow out your results, as you will get every possible combination. ``` > options(timeou…

Comment: Definition of disease_subtype abbreviations by Lucas Schiffer ▴ 240

Hi Sehyun, I do not know myself and can only find one reference in the [template.csv](https://github.com/waldronlab/curatedMetagenomicDataC…

Votes

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Are polynomial contrasts for a time factor possible in DESeq2?

Are polynomial contrasts for a time factor possible in DESeq2?

Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

Awards • All

Scholar to Gordon Smyth 47k

Popular Question to Robert Castelo ★ 3.0k