Bioconductor Outlier

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545

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Outlier

updated 18 months ago by ATpoint ★ 4.5k • written 19 months ago by sanchita.bhattacharya • 0

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1.5k

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DESeq2 RNAseq outlier

updated 20 months ago by ATpoint ★ 4.5k • written 20 months ago by James • 0

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2.2k

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RNAseq DESeq2 outlier counts DE analysis

updated 4.4 years ago by Kevin Blighe ★ 4.0k • written 4.4 years ago by DcL-A • 0

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876

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deseq2 outlier normalization removal

updated 4.5 years ago by Michael Love 42k • written 4.6 years ago by knholm • 0

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7.1k

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deseq2 rnaseq PCA hierarchical clustering outlier

7.8 years ago wd ▴ 30

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1.7k

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rnaseq outlier statistics batch effect

updated 8.3 years ago by Gordon Smyth 51k • written 8.3 years ago by grastalt27 • 0

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1.4k

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arrayQualityMetrics Microarray Outlier

updated 8.9 years ago by Wolfgang Huber ★ 13k • written 8.9 years ago by horcsct ▴ 10

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4.7k

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DESeq2 outlier RNASeq

updated 9.8 years ago by Michael Love 42k • written 9.8 years ago by kenneth.daily • 0

8 results • Page 1 of 1

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Comment: Bumphunter Algorithm Returns Regions with very few CpGs by h1rlw1ndphe4s0 • 0

Hey [subway surfers][1], Is this the algorithm you mentioned yesterday? [1]: https://subwaysurfs.io

Comment: Bioconductor Digest, Vol 68, Issue 7 by parikapain1353 • 0

Hi [melon sandbox][1], is there any new update to this file? [1]: https://melon-sandbox.com

Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270

Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…

Answer: segfault when using singleR with Azimuth reference by James W. MacDonald 67k

The training step is usually faster than the classification step, so you might try running `trainSingleR` on the reference to see if that i…

Comment: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi by James W. MacDonald 67k

You don't. I believe Fisher has a quote that applies here. Also, please don't add to five year old posts. Start a new one.

Votes

Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

Answer: How to control batch effect if Group and batch are same?

Awards • All

Popular Question to Andrew_McDavid ▴ 270

Scholar to Ryan C. Thompson ★ 7.9k