Bioconductor Parameters

Showing : Parameters • reset

votes

replies

2.3k

views

xcms adjustRtime parameters scantime error biocparallel error

5.2 years ago abrsoule ▴ 30

votes

1.3k

views

MAST AIC calcuation Parameters single cell hurdle model

updated 8 months ago by rproendo ▴ 30 • written 5.8 years ago by mcalgaro93 • 0

votes

1.4k

views

rtracklayer liftOver parameters minMatch

updated 6.6 years ago by Michael Lawrence ★ 11k • written 6.6 years ago by Nik dAK ▴ 10

votes

replies

1.5k

views

Volcano plot Parameters

updated 7.2 years ago by Gordon Smyth 51k • written 7.2 years ago by Sanches • 0

votes

1.2k

views

lpsymphony R parameters control warm start

updated 8.4 years ago by Wolfgang Huber ★ 13k • written 8.5 years ago by chiel • 0

5 results • Page 1 of 1

Recent ...

Replies

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Votes

A: correcting the batch effects in Limma and SVA

Awards • All

Popular Question to alexandre.blais ▴ 50