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Parameters
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2
votes
13
replies
2.5k
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Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms
adjustRtime
parameters
scantime error
biocparallel error
5.4 years ago
abrsoule
▴ 30
0
votes
1
reply
1.4k
views
How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST
AIC calcuation
Parameters
single cell
hurdle model
updated 11 months ago by
rproendo
▴ 30 • written 6.0 years ago by
mcalgaro93
• 0
0
votes
1
reply
1.4k
views
rtracklayer::liftOver parameters (minMatch)
rtracklayer
liftOver
parameters
minMatch
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
Nik dAK
▴ 10
0
votes
4
replies
1.6k
views
Volcano Plot after using Treat Function
Volcano plot
Parameters
updated 7.4 years ago by
Gordon Smyth
52k • written 7.4 years ago by
Sanches
• 0
0
votes
1
reply
1.2k
views
More control parameters expected in lpsymphony?
lpsymphony
R
parameters
control
warm start
updated 8.7 years ago by
Wolfgang Huber
★ 13k • written 8.7 years ago by
chiel
• 0
5 results • Page
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Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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