Showing : Parameters • reset
2
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Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
5.5 years ago abrsoule ▴ 30
0
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1
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1.4k
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How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST AIC calcuation Parameters single cell hurdle model
updated 12 months ago by ▴ 30 • written 6.1 years ago by • 0
0
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1
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1.5k
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rtracklayer::liftOver parameters (minMatch)
rtracklayer liftOver parameters minMatch
updated 7.0 years ago by ★ 11k • written 7.0 years ago by ▴ 10
0
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4
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1.7k
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Volcano Plot after using Treat Function
Volcano plot Parameters
updated 7.5 years ago by 52k • written 7.5 years ago by • 0
0
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1
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1.2k
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More control parameters expected in lpsymphony?
lpsymphony R parameters control warm start
updated 8.8 years ago by ★ 13k • written 8.8 years ago by • 0
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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k
Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…
Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…
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Answer: Merging annotation with differential expression output
Answer: Explannation for ROAST results
Comment: Limma comparing gene expression between base line and one treatment
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
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