Bioconductor PlotPCA

Showing : PlotPCA • reset

votes

replies

41k

views

plotPCA deseq2 labels

updated 7.4 years ago by Federico Marini ▴ 150 • written 7.4 years ago by al-ash ▴ 50

votes

replies

3.1k

views

DESeq2 plotPCA rlog transformation vsd

6.8 years ago Jane Merlevede ▴ 90

votes

replies

3.3k

views

plotPCA PCA

updated 13 months ago by hediatnani • 0 • written 14 months ago by Yijing • 0

votes

replies

3.2k

views

deseq2 rlog variancestabilizingtransformation plotpca pca

6.7 years ago lirongrossmann ▴ 80

votes

replies

1.5k

views

deseq2 plotPCA PCA rna-seq

8.0 years ago newsomew13 • 0

vote

896

views

DESeq2 RNASeq plotpca

updated 3.3 years ago by Michael Love 42k • written 3.3 years ago by s1760083 • 0

votes

replies

2.4k

views

DESeq2 plotPCA

2.3 years ago • updated 2.2 years ago synat.keam • 0

vote

replies

676

views

plotMA ggplot2 plotPCA DESeq2

updated 7 months ago by Michael Love 42k • written 7 months ago by sara.jacobson • 0

votes

replies

6.6k

views

plotpca DESeq2

2.4 years ago bjen731 ▴ 10

votes

replies

1.4k

views

plotPCA DESeq2 RUVSeq removebatcheffect()

3.1 years ago elizabethe819 • 0

votes

replies

423

views

Rstudio plotPCA DESeq2

6 months ago • updated 5 months ago yee • 0

votes

7.2k

views

deseq2 plotpca PCa

updated 6.6 years ago by Michael Love 42k • written 6.6 years ago by lirongrossmann ▴ 80

votes

657

views

deseq2 PlotPCA draw.triple.venn

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by N. Perera • 0

votes

639

views

deseq2 plotpca

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by snp31 • 0

votes

replies

1.1k

views

deseq2 biplot plotpca

updated 4.3 years ago by Michael Love 42k • written 4.3 years ago by ecg1g15 ▴ 20

votes

replies

987

views

pca plotpca

7.6 years ago marianarochadesouza • 0

16 results • Page 1 of 1

Recent ...

Replies

Comment: GSVA function by Robert Castelo ★ 3.3k

No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …

Comment: conumee with Infinium MethylationEPIC v2.0 by sgomez • 0

Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840

Comment: Error in render R qmd document (could not find function "process") by ATpoint ★ 4.2k

This is not related to Bioconductor, and even if it was, please understand that without code one cannot debug these questions. The most obv…

Comment: GSVA function by michelafrancesconi8 • 0

When I log trasform my matrix after the DESeq2 normalization, I have some negative value, should I add a 1 to all my matrix? Thank you Mi…

Comment: Normalisation using clinical traits in RNA seq using DESeq2 by sukeshinik5 • 0

Thank you, so much for the response. When we estimate factors of unwanted variable, which is the better options for factorisation of the va…

Votes

DiffBind Batch Effect

A: DiffBind Batch Effect

C: DiffBind Batch Effect

Awards • All

Popular Question to Robert Castelo ★ 3.3k