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PlotPCA
•
reset
0
votes
2
replies
423
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio
plotPCA
DESeq2
6 months ago • updated 5 months ago
yee
• 0
1
vote
5
replies
676
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 7 months ago by
Michael Love
42k • written 7 months ago by
sara.jacobson
• 0
0
votes
3
replies
3.3k
views
How to change the dot size in plotPCA?
plotPCA
PCA
updated 13 months ago by
hediatnani
• 0 • written 14 months ago by
Yijing
• 0
2
votes
4
replies
2.4k
views
Plot PC1 and PC4 in plotPCA function
DESeq2
plotPCA
2.3 years ago • updated 2.2 years ago
synat.keam
• 0
3
votes
3
replies
6.6k
views
Adding sample label to PCA plot
plotpca
DESeq2
2.4 years ago
bjen731
▴ 10
2
votes
2
replies
1.4k
views
How to retain metadata after running RemoveBatchEffect() after RUVSeq to format PCA plot?
plotPCA
DESeq2
RUVSeq
removebatcheffect()
3.1 years ago
elizabethe819
• 0
1
vote
1
reply
896
views
No result from plotPCA()
DESeq2
RNASeq
plotpca
updated 3.3 years ago by
Michael Love
42k • written 3.3 years ago by
s1760083
• 0
0
votes
3
replies
1.1k
views
Biplot environmental variables on top of PCA
deseq2
biplot
plotpca
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
ecg1g15
▴ 20
0
votes
1
reply
657
views
Comparisons between populations
deseq2
PlotPCA
draw.triple.venn
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
N. Perera
• 0
0
votes
1
reply
639
views
PCA analysis of 2/3 samples out of a 8 sample countmatrix
deseq2
plotpca
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
snp31
• 0
12
votes
1
reply
7.2k
views
identifying the samples on plotPCA
deseq2
plotpca
PCa
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
lirongrossmann
▴ 80
0
votes
6
replies
3.2k
views
Different PCA plots using rlog and vsd on the same data set
deseq2
rlog
variancestabilizingtransformation
plotpca
pca
6.7 years ago
lirongrossmann
▴ 80
2
votes
4
replies
3.1k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2
plotPCA
rlog transformation
vsd
6.8 years ago
Jane Merlevede
▴ 90
14
votes
5
replies
41k
views
plotPCA - how to add labels to a PCA plot
plotPCA
deseq2
labels
updated 7.4 years ago by
Federico Marini
▴ 150 • written 7.4 years ago by
al-ash
▴ 50
0
votes
0
replies
987
views
group vectors around pca origins into 5 degrees arc cluster
pca
plotpca
7.6 years ago
marianarochadesouza
• 0
0
votes
3
replies
1.5k
views
Trouble with Custom PC Plot
deseq2
plotPCA
PCA
rna-seq
8.0 years ago
newsomew13
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: GSVA function
by
Robert Castelo
★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0
by
sgomez
• 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
Comment: Error in render R qmd document (could not find function "process")
by
ATpoint
★ 4.2k
This is not related to Bioconductor, and even if it was, please understand that without code one cannot debug these questions. The most obv…
Comment: GSVA function
by
michelafrancesconi8
• 0
When I log trasform my matrix after the DESeq2 normalization, I have some negative value, should I add a 1 to all my matrix? Thank you Mi…
Comment: Normalisation using clinical traits in RNA seq using DESeq2
by
sukeshinik5
• 0
Thank you, so much for the response. When we estimate factors of unwanted variable, which is the better options for factorisation of the va…
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DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
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C: DiffBind Batch Effect
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