Showing : Proteome • reset
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analysis of overexpressed proteins in metaproteomes
Proteomics ProteoMM ProteomicsWorkflow Proteome
written 5 months ago by ▴ 10
2
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6
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784
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Biostrings error at retrieving protein sequences
SequenceMatching Biostrings DifferentialExpression Proteome
updated 7 months ago by 16k • written 7 months ago by • 0
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1
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482
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catagorization of proteins
Proteome ProtGenerics
written 19 months ago by • 0
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567
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Outliers
Proteomics Proteome
updated 19 months ago by ★ 4.1k • written 19 months ago by • 0
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755
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ProteoMM analysis with two replicates
shotgunproteomics Proteome proteomics Proteomics ProteoMM
2.2 years ago ary.lech ▴ 10
1
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7
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3.2k
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How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData Proteome Database DEP
3.2 years ago tpm • 0
1
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0
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1.5k
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News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
3.4 years ago info ▴ 10
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1
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1.1k
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R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 3.5 years ago by ★ 1.4k • written 3.5 years ago by ▴ 20
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5
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2.4k
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mRNA-seq cross-species analysis, is it possible?
Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by ▴ 370
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813
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BSgenome data package of the human proteome: Does it exist?
Proteome Proteome
14.6 years ago Tillinghast, Guy, M.D. ▴ 30
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2
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1.7k
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I: Two way anova or manova?
Proteome Proteome
updated 16.8 years ago by ▴ 90 • written 16.8 years ago by ▴ 20
11 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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