Bioconductor RNASeq

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 21 hours ago by ATpoint ★ 4.1k • written 1 day ago by james.zhang20 • 0

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1.7k

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sgseq rnaseq

updated 2 days ago by Leonard Goldstein ▴ 200 • written 6.7 years ago by Sylvain Foisy ▴ 80

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136

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DESeq2 RNAseq

updated 8 days ago by Michael Love 41k • written 8 days ago by kcarey • 0

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150

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limma RNASeq voom

written 10 days ago by taur.vil • 0

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198

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technicalReplicates BatchEffect limma RNASeq

13 days ago • updated 10 days ago catv • 0

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163

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limma edgeR RNASeq

updated 13 days ago by Gordon Smyth 50k • written 14 days ago by Shaimaa Gamal • 0

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106

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 14 days ago by Michael Love 41k • written 14 days ago by 09191919 • 0

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133

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scRNAseq RNAseq

updated 22 days ago by ATpoint ★ 4.1k • written 24 days ago by Merav • 0

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851

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clusterProfiler RNASeq

updated 8 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

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908

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SingleCell RNASeq RNASeqData scRNAseq

updated 15 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

10 results • Page 1 of 1

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Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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