Showing : RNASeqPower • reset
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Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA RNASeqPower DEGseq
written 13 months ago by • 0
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featureCounts fails to load annotation file
featurecounts rnas RNASeqPower
14 months ago yasmin.hilliam ▴ 10
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Batch adjustment for cohort based RNA seq data
RNASeqPower removeBatchEffect cpm Batcheffect
14 months ago sukeshinik5 ▴ 20
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RNASeq time course analysis, missing time points for control
RNASeqData RnaSeqSampleSize RNASeq RNASeqPower
2.0 years ago drewhaydensteele • 0
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Comparing RNASeq data from multiple studies
RNASeqData RnaSeqSampleSize RNASeqPower RNASeq
updated 2.2 years ago by ▴ 780 • written 2.2 years ago by • 0
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Is it okay to increase filtering to get more significant Adjusted P Values for DEGs found using Limma?
RNASeqPower edgeR DifferentialExpression limma RNASeq
updated 2.6 years ago by 53k • written 2.6 years ago by • 0
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Typo in citation for RNASeqPower
RNASeqPower citation
3.5 years ago stephenjjohnson • 0
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How to calculate coefficient of variation within group?
edgeR limma RNASeqPower
updated 3.8 years ago by 53k • written 4.8 years ago by ▴ 60
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getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 9.8 years ago by ▴ 20 • written 9.8 years ago by • 0
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Depth or # of reads for RNASeqPower
rnaseqpower
11.2 years ago drnknmstrr • 0
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Power Calculation of multiple factors design of RNA-sequencing study
edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower
11.8 years ago Guest User ★ 13k
11 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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