Bioconductor RNASeqPower

Showing : RNASeqPower • reset

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featurecounts rnas RNASeqPower

4 weeks ago yasmin.hilliam ▴ 10

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RNASeqPower removeBatchEffect cpm Batcheffect

7 weeks ago sukeshinik5 ▴ 20

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RNASeqData RnaSeqSampleSize RNASeq RNASeqPower

11 months ago drewhaydensteele • 0

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RNASeqData RnaSeqSampleSize RNASeqPower RNASeq

updated 13 months ago by Basti ▴ 780 • written 13 months ago by Luke • 0

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RNASeqPower edgeR DifferentialExpression limma RNASeq

updated 18 months ago by Gordon Smyth 51k • written 18 months ago by Sara • 0

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RNASeqPower citation

2.4 years ago stephenjjohnson • 0

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edgeR limma RNASeqPower

updated 2.7 years ago by Gordon Smyth 51k • written 3.7 years ago by Ahdee ▴ 50

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rnaseqpower sspa sample size sequencing complex-design

updated 8.7 years ago by m.van_iterson ▴ 20 • written 8.8 years ago by roser.navarro • 0

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rnaseqpower

10.1 years ago drnknmstrr • 0

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edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower

10.7 years ago Guest User ★ 13k

10 results • Page 1 of 1

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Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Votes

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

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