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RRBS
•
reset
4
votes
5
replies
1.0k
views
edgeR for a mixture experiment
edgeR
model-selection
RRBS
mixture-experiment
3.1 years ago
ingerslev
• 0
0
votes
2
replies
838
views
MethylCC for RRBS data of Cord Blood
MethylCC
RRBS
cord blood
3.8 years ago
weichen-cls
• 0
0
votes
0
replies
750
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
3.8 years ago
i.s.castanho
• 0
0
votes
1
reply
608
views
BiSeq - betaResults output only contains chr1 and chr2
biseq
betaRegression
RRBS
Methylation
4.1 years ago
i.s.castanho
• 0
5
votes
14
replies
2.0k
views
Odd P-value distribution in edgeR on RRBS data
edgeR
rrbs
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
ingerslev
• 0
0
votes
4
replies
2.2k
views
MethylKit read in issue
methykit
rrbs
updated 6.0 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
bekah
▴ 40
0
votes
3
replies
1.5k
views
scalability of edgeR on RRBS methylation data
edgeR
methyation
RRBS
updated 6.3 years ago by
Gordon Smyth
50k • written 6.3 years ago by
osa.zuta
▴ 40
0
votes
1
reply
1.1k
views
BiSeq - modelling options betaRegression
biseq
RRBS
betaregression
7.1 years ago
l.eijssen
• 0
1
vote
4
replies
1.8k
views
Using SVA with RRBS data
sva
RRBS
updated 7.1 years ago by
Jeff Leek
▴ 650 • written 7.1 years ago by
mrodrigues.fernanda
▴ 10
0
votes
3
replies
1.7k
views
SVA package for RRBS - bisulfite methylation data
rrbs
batch effect
methylation
sva
updated 7.6 years ago by
dashbrook1
• 0 • written 8.8 years ago by
GFM
▴ 20
4
votes
2
replies
1.4k
views
Bounded Regression with Limma for RRBS?
limma
rrbs
bsseq
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
nhejazi
• 0
0
votes
5
replies
2.0k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq
RRBS
SAAP-BS
coverage
9.0 years ago
maria.maqueda
• 0
12 results • Page
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Comment: Postdoctoral Position in Bioinformatics - Mainz, Germany
by
Jammie
• 0
[Online kasiinod][1] pakuvad mängijatele võimalust nautida põnevat hasartmängukogemust otse oma arvuti või mobiilseadme kaudu. Need kasiino…
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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