Bioconductor RSQLite

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RSQLite org.Hs.eg.db

4.3 years ago chenghaomai • 0

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RSQLite lumi

5.1 years ago Rohmatul • 0

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1.2k

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jaspar rsqlite

updated 7.8 years ago by James W. MacDonald 68k • written 7.8 years ago by m.d.shapiro • 0

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R RSQLite

updated 8.4 years ago by James W. MacDonald 68k • written 8.4 years ago by biostR ▴ 10

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reactome.db rsqlite

updated 8.8 years ago by willem.ligtenberg ▴ 150 • written 8.8 years ago by Lluís Revilla Sancho ▴ 760

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1.4k

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rsqlite

8.9 years ago ngrundmann • 0

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rsqlite bioconductor bioclite rcpp.h

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by conkline • 0

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oligo rsqlite pd.hta.2.0

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by Vincent J. Carey, Jr. 6.7k

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org.hs.eg.db DBI rsqlite

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by Gordon Smyth 53k

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2.5k

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annotation annotationdbi rsqlite

10.7 years ago Ceca Bojic ▴ 10

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biocinstaller genomicfeatures rsqlite

updated 11.0 years ago by Dan Tenenbaum ★ 8.2k • written 11.0 years ago by vimartin • 0

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VariantAnnotation RSQLite

11.0 years ago remi.tournebize ▴ 10

12 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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