Bioconductor RSQLite

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RSQLite org.Hs.eg.db

4.1 years ago • updated 4.0 years ago chenghaomai • 0

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RSQLite lumi

4.8 years ago Rohmatul • 0

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jaspar rsqlite

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by m.d.shapiro • 0

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R RSQLite

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by biostR ▴ 10

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reactome.db rsqlite

updated 8.6 years ago by willem.ligtenberg ▴ 150 • written 8.6 years ago by Lluís Revilla Sancho ▴ 760

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rsqlite

8.7 years ago ngrundmann • 0

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rsqlite bioconductor bioclite rcpp.h

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by conkline • 0

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oligo rsqlite pd.hta.2.0

updated 9.0 years ago by James W. MacDonald 68k • written 9.0 years ago by Vincent J. Carey, Jr. 6.7k

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org.hs.eg.db DBI rsqlite

updated 9.4 years ago by Martin Morgan 25k • written 9.4 years ago by Gordon Smyth 53k

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annotation annotationdbi rsqlite

10.5 years ago Ceca Bojic ▴ 10

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biocinstaller genomicfeatures rsqlite

updated 10.8 years ago by Dan Tenenbaum ★ 8.2k • written 10.8 years ago by vimartin • 0

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VariantAnnotation RSQLite

10.8 years ago remi.tournebize ▴ 10

12 results • Page 1 of 1

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Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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