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DESeq2 RSTUDIO PCAtools

updated 7 days ago by swbarnes2 ★ 1.3k • written 9 days ago by Aaliya • 0

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RStudio ggkegg

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Ramirj49 • 0

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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Rstudio plotPCA DESeq2

5 months ago yee • 0

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AccNo OrgDb convert Organismname RStudio

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by j_denton • 0

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RStudio convert ensembldb NCBI

5 months ago j_denton • 0

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error RStudio ggplot2 DESeq2

updated 5 months ago by James W. MacDonald 65k • written 6 months ago by BioES • 0

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Rstudio scRNAseq DESeq2

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by DrFizz • 0

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scRNAseq RStudio DESeq2

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by DrFizz • 0

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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