Bioconductor RUVSeq

Showing : RUVSeq • reset

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10k

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deseq2 r ruvseq normalization rnaseq

10.3 years ago • updated 10.2 years ago nickp60 • 0

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3.0k

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edgeR ruvseq rnaseq isoforms

10.4 years ago sergio.espeso-gil • 0

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deseq2 ruvseq sizefacotrs

updated 10.4 years ago by davide risso ▴ 980 • written 10.4 years ago by Assa Yeroslaviz ★ 1.5k

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3.1k

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ruvseq ruv

updated 10.4 years ago by davide risso ▴ 980 • written 10.4 years ago by Pauly Lin ▴ 160

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4.3k

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RUVseq logFC edgeR

10.4 years ago Marie • 0

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RUV ruvseq rnaseq

10.4 years ago sergio.espeso-gil • 0

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1.6k

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RUVSeq

11.1 years ago • updated 11.0 years ago davide risso ▴ 980

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3.3k

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ruvseq RUVs EDA

11.1 years ago asif.zubair • 0

108 results • Page 3 of 3

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Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Answer: DESeq2 design for haplotype MPRA by Michael Love 43k

> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…

Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

R-4.5.1 is compatible with both release and devel versions of Bioconductor. Which one are you using? I am still on release, and it's fine: …

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Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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