Showing : Repitools • reset
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3
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How to handle multi-TSS genes in Repitools?
repitools promoter tss annotation
7.0 years ago Ryan C. Thompson ★ 7.9k
1
vote
2
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1.6k
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cpgDensityCalc function in Repitools giving contradictory tools
repitools bioconductor cpgDensityCalc
8.0 years ago divyswar01 • 0
0
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0
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1.1k
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Analysis of MBD-seq data without ssl control using BayMeth
Baymeth methylation MBD-seq Repitools
8.8 years ago pm2015 • 0
0
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0
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1.1k
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SssI free analysis in BayMeth/Repitools
repitools
9.7 years ago Matthias Lienhard ▴ 280
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1.1k
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Repitools - featureScores - mappability Bsgenome object
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
11.0 years ago Dario Strbenac ★ 1.6k
0
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0
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1.5k
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Repitools - featureScores - mappability Bsgenome object
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
11.1 years ago Jaritz,Markus ▴ 20
0
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5
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2.5k
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Graph of methylation data around TSS - Repitools or other package?
GO Repitools GO Repitools
updated 11.4 years ago by ★ 1.6k • written 11.4 years ago by ★ 1.1k
0
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1.2k
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Analysing grouped datasets in repitools
limma Repitools limma Repitools
12.1 years ago Guest User ★ 13k
0
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21
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7.6k
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BAM files to Genomic Ranges object
Alignment convert Repitools Alignment convert Repitools
updated 16 months ago by • 0 • written 12.2 years ago by ▴ 280
0
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3
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2.0k
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Repitools/ClusterPlots
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
updated 13.4 years ago by ▴ 580 • written 13.4 years ago by ★ 13k
10 results • Page 1 of 1
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Replies
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k
Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…
Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…
Votes
Answer: Explannation for ROAST results
Comment: Limma comparing gene expression between base line and one treatment
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
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