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Repitools
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2.2k
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How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.7 years ago
Ryan C. Thompson
★ 7.9k
1
vote
2
replies
1.5k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.6 years ago
divyswar01
• 0
0
votes
0
replies
1.0k
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
8.4 years ago
pm2015
• 0
0
votes
0
replies
990
views
SssI free analysis in BayMeth/Repitools
repitools
9.3 years ago
Matthias Lienhard
▴ 280
0
votes
0
replies
1.1k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.7 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.4k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.7 years ago
Jaritz,Markus
▴ 20
0
votes
5
replies
2.3k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 11.0 years ago by
Dario Strbenac
★ 1.5k • written 11.0 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
1.1k
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
11.7 years ago
Guest User
★ 13k
0
votes
21
replies
7.2k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 11 months ago by
Marge
• 0 • written 11.9 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
1.9k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 13.0 years ago by
Chao-Jen Wong
▴ 580 • written 13.0 years ago by
Guest User
★ 13k
10 results • Page
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Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thank you so much for the clarification. As you said the replicates are the cells from different plates. For instance, both R01C01 and R05C…
Answer: Handling Epic Array Data
by
James W. MacDonald
67k
You don't need a sample sheet. It is just a simple way to identify the Idat files and possibly include sample information. But you appear t…
Comment: preprocessIllumina error with EPICv2 array
by
Rakesh
• 0
Amazing, thanks for the help!
Answer: Allele frequencies for ALL alleles of one SNP ?
by
Robert Castelo
★ 3.4k
Hi, the [GenomicScores](https://bioconductor.org/packages/GenomicSCores) package provides supporting infrastructure to create annotation re…
Answer: preprocessIllumina error with EPICv2 array
by
James W. MacDonald
67k
You shouldn't need to change the annotation, and certainly not like that. You should never need to use the `@` function directly - there ar…
Votes
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: preprocessIllumina error with EPICv2 array
Answer: preprocessIllumina error with EPICv2 array
Answer: UniProt.ws query loading indefinitely
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