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Rory Stark
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Diffbind heatmap color change
diffbind
rory stark
6.8 years ago
andrew.gehrke
• 0
0
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2
replies
1.2k
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Diffbind analysis warning
rory stark
7.4 years ago • updated 6.9 years ago
mforoo1
• 0
1
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7
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2.7k
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loading dba.plotVolcano in DiffBind
diffbind
chipseq
atac-seq
rory stark
updated 7.1 years ago by
Rory Stark
★ 5.2k • written 7.1 years ago by
andrew.gehrke
• 0
1
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8
replies
1.3k
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Diffbind multiple blocking factor
diffbind
rory stark
chip seq
updated 3.5 years ago by
Rory Stark
★ 5.2k • written 4.0 years ago by
bioinfouser2
▴ 10
1
vote
2
replies
841
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The coordinate system problem about DiffBind output
diffbind
Rory Stark
coordinate
updated 4.1 years ago by
Rory Stark
★ 5.2k • written 4.2 years ago by
Guandong Shang
▴ 40
0
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7
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1.8k
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CHIPQC error regarding BiocParallel
CHIPQC
Diffbind
chipseq
rory stark
Thomas Carroll
updated 21 months ago by
arisarkar88
▴ 40 • written 4.0 years ago by
bioinfouser2
▴ 10
0
votes
1
reply
1.9k
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DiffBind TMM normalization
Rory Stark
diffbind
TMM
edgeR
chipseq
updated 7.8 years ago by
Rory Stark
★ 5.2k • written 8.0 years ago by
akdess
• 0
7 results • Page
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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