Showing : Source • reset
1
vote
9
replies
1.0k
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Cannot install oligo on Fedora
oligo source Install
6 months ago • updated 5 months ago Guido Hooiveld ★ 4.1k
0
votes
2
replies
719
views
Unable to access Git links.
Source flowCore Repository git
updated 19 months ago by 4.1k • written 19 months ago by • 0
0
votes
5
replies
4.1k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller installation install source conda
updated 8.3 years ago by 25k • written 8.3 years ago by ▴ 40
1
vote
14
replies
12k
views
Unable to connect from R 3.2.2
biocinstaller source
9.0 years ago michel.renou • 0
2
votes
7
replies
2.1k
views
Bioconductor Installation may be insecure against man-in-the-middle attacks
security http source installation
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by • 0
4
votes
1
reply
2.5k
views
Get source code for rpkm() function in edgeR
edgeR rpkm source code
updated 9.6 years ago by 25k • written 9.6 years ago by ▴ 10
6 results • Page 1 of 1
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Comment: Deseq2 res Function by James W. MacDonald 67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Votes
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
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